Package etomica.virial

Class ConfigurationClusterWertheimGCPMDirectSampling

java.lang.Object

etomica.virial.ConfigurationCluster

etomica.virial.ConfigurationClusterWertheimGCPMDirectSampling

All Implemented Interfaces:

Configuration

public class ConfigurationClusterWertheimGCPMDirectSampling
extends ConfigurationCluster

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected PNWaterGCPMThreeSite	associationPotential
protected PNWaterGCPMThreeSite	associationPotential2
protected PNWaterGCPMThreeSite	associationPotential3
protected double	diagramIndex
protected PNWaterGCPMThreeSite	nonAssociationPotential
protected IRandom	random

Fields inherited from class etomica.virial.ConfigurationCluster

space

Constructor Summary

Constructors

Constructor	Description
ConfigurationClusterWertheimGCPMDirectSampling(Space _space, IRandom random, PNWaterGCPMThreeSite associationPotential)
ConfigurationClusterWertheimGCPMDirectSampling(Space _space, IRandom random, PNWaterGCPMThreeSite associationPotential, PNWaterGCPMThreeSite associationPotential2)
ConfigurationClusterWertheimGCPMDirectSampling(Space _space, IRandom random, PNWaterGCPMThreeSite associationPotential, PNWaterGCPMThreeSite associationPotential2, double diagramIndex)
ConfigurationClusterWertheimGCPMDirectSampling(Space _space, IRandom random, PNWaterGCPMThreeSite associationPotential, PNWaterGCPMThreeSite associationPotential2, PNWaterGCPMThreeSite associationPotential3)

Method Summary

Modifier and Type	Method	Description
void	association(MoleculePair pair, Box box)
void	association2(MoleculePair pair, Box box)
void	association3(MoleculePair pair, Box box)
void	association4(MoleculePair pair, Box box)
void	initializeCoordinatesBranch(Box box)
void	initializeCoordinatesTetramer(Box box)
void	initializeCoordinatesTrimer(Box box)
void	translationTetramer(double[] d, double[] e, double[] f, Box box)
void	translationTrimer(double[] d, double[] e, Box box)

Methods inherited from class etomica.virial.ConfigurationCluster

initializeCoordinates

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

random

protected IRandom random

associationPotential

protected PNWaterGCPMThreeSite associationPotential

associationPotential2

protected PNWaterGCPMThreeSite associationPotential2

associationPotential3

protected PNWaterGCPMThreeSite associationPotential3

nonAssociationPotential

protected PNWaterGCPMThreeSite nonAssociationPotential

diagramIndex

protected double diagramIndex

Constructor Detail

ConfigurationClusterWertheimGCPMDirectSampling

public ConfigurationClusterWertheimGCPMDirectSampling(Space _space,
                                                      IRandom random,
                                                      PNWaterGCPMThreeSite associationPotential)

ConfigurationClusterWertheimGCPMDirectSampling

public ConfigurationClusterWertheimGCPMDirectSampling(Space _space,
                                                      IRandom random,
                                                      PNWaterGCPMThreeSite associationPotential,
                                                      PNWaterGCPMThreeSite associationPotential2)

ConfigurationClusterWertheimGCPMDirectSampling

public ConfigurationClusterWertheimGCPMDirectSampling(Space _space,
                                                      IRandom random,
                                                      PNWaterGCPMThreeSite associationPotential,
                                                      PNWaterGCPMThreeSite associationPotential2,
                                                      PNWaterGCPMThreeSite associationPotential3)

ConfigurationClusterWertheimGCPMDirectSampling

public ConfigurationClusterWertheimGCPMDirectSampling(Space _space,
                                                      IRandom random,
                                                      PNWaterGCPMThreeSite associationPotential,
                                                      PNWaterGCPMThreeSite associationPotential2,
                                                      double diagramIndex)

Method Detail

initializeCoordinatesTrimer

public void initializeCoordinatesTrimer(Box box)

initializeCoordinatesTetramer

public void initializeCoordinatesTetramer(Box box)

initializeCoordinatesBranch

public void initializeCoordinatesBranch(Box box)

translationTrimer

public void translationTrimer(double[] d,
                              double[] e,
                              Box box)

translationTetramer

public void translationTetramer(double[] d,
                                double[] e,
                                double[] f,
                                Box box)

association

public void association(MoleculePair pair,
                        Box box)

association2

public void association2(MoleculePair pair,
                         Box box)

association3

public void association3(MoleculePair pair,
                         Box box)

association4

public void association4(MoleculePair pair,
                         Box box)