Packages

Package	Description
etomica
etomica.action	Define elementary actions that can be performed on simulation elements.
etomica.action.activity
etomica.action.controller
etomica.AlkaneEH
etomica.association
etomica.association.AceticAcid
etomica.association.GCPMWater
etomica.atom
etomica.atom.iterator
etomica.box	Defines the Box class, which is a container of molecules, and provides means to track activities relating to it.
etomica.cavity
etomica.chem.electrostatics
etomica.chem.elements
etomica.compatibility
etomica.config
etomica.data
etomica.data.histogram
etomica.data.history
etomica.data.meter
etomica.data.types
etomica.dcvgcmd
etomica.dielectric
etomica.dimer
etomica.eam
etomica.eigenstuff
etomica.exception
etomica.freeenergy.npath
etomica.graph.engine
etomica.graph.engine.impl
etomica.graph.isomorphism
etomica.graph.iterators
etomica.graph.iterators.filters
etomica.graph.model
etomica.graph.model.comparators
etomica.graph.model.impl
etomica.graph.operations
etomica.graph.property
etomica.graph.traversal
etomica.graph.util
etomica.graph.view.rasterizer
etomica.graph.viewer
etomica.graphics
etomica.heVLE
etomica.integrator
etomica.integrator.mcmove
etomica.interfacial
etomica.kmc
etomica.lattice
etomica.lattice.crystal
etomica.liquidLJ
etomica.mappedRdf
etomica.mappedvirial
etomica.math	Provides classes implementing some selected mathematical utilities.
etomica.math.discrete	Defines classes that provide some discrete mathematics utilities, particularly the generation of permutations and combinations.
etomica.math.function
etomica.math.geometry	Provides classes that define points, planes, and geometric shapes.
etomica.math.geometry.coordinate
etomica.math.numerical
etomica.meta
etomica.meta.annotations
etomica.meta.javadoc
etomica.meta.properties
etomica.meta.serializers
etomica.meta.wrappers
etomica.metastable
etomica.models.clathrates
etomica.models.co2	Library of molecular models of CO2.
etomica.models.nitrogen
etomica.models.OPLS
etomica.models.rowley
etomica.models.traPPE
etomica.models.water	Library of molecular models of Water.
etomica.modifier
etomica.modules
etomica.modules.adsorption
etomica.modules.catalysis
etomica.modules.chainequilibrium
etomica.modules.clustergenerator
etomica.modules.colloid
etomica.modules.crystalviewer
etomica.modules.dcvgcmd
etomica.modules.droplet
etomica.modules.ensembles
etomica.modules.glass
etomica.modules.insertion
etomica.modules.interfacial
etomica.modules.ljmd
etomica.modules.materialfracture
etomica.modules.mu
etomica.modules.multiharmonic
etomica.modules.multiharmonic.mbar
etomica.modules.multiharmonic.overlap
etomica.modules.multiharmonic.umbrella
etomica.modules.nucleation
etomica.modules.osmosis
etomica.modules.pistoncylinder
etomica.modules.reactionequilibrium
etomica.modules.rheology
etomica.modules.rosmosis
etomica.modules.sam
etomica.modules.selfassembly
etomica.modules.statistics
etomica.modules.swmd
etomica.modules.vle
etomica.molecule
etomica.molecule.iterator
etomica.nbr
etomica.nbr.cell
etomica.nbr.cell.molecule
etomica.nbr.list
etomica.nbr.list.molecule
etomica.nbr.molecule
etomica.nbr.site
etomica.normalmode
etomica.normalmode.nptdemo
etomica.osmoticvirial
etomica.overlap
etomica.parser
etomica.polydisperseHS
etomica.potential
etomica.rotation
etomica.server
etomica.server.core.construction
etomica.server.dao
etomica.server.health
etomica.server.representations
etomica.server.resources
etomica.server.resources.data
etomica.server.serializers
etomica.simulation
etomica.simulation.prototypes
etomica.space	Specifies abstract classes and interfaces that define the nature of the physical space in which a simulation is performed.
etomica.space1d	1-dimensional space, generating vectors etc defined in terms of x coordinates only.
etomica.space2d	2-dimensional space, generating vectors etc defined in terms of x and y coordinates.
etomica.space3d	3-dimensional space, generating vectors etc defined in terms of x, y, and z coordinates.
etomica.spaceNd
etomica.species
etomica.spin.heisenberg
etomica.spin.ising
etomica.starpolymer
etomica.statmech	Solid and liquid equations of state for hard spheres and Lennard-Jones model.
etomica.surfacetension
etomica.tests
etomica.tmmc
etomica.units	Defines units and dimensions that are used for conversions during input or output.
etomica.units.dimensions
etomica.units.gui	Classes used for a graphical interface for selecting units.
etomica.units.systems	Provides classes that specify a system of units, such as SI, English, etc.
etomica.util
etomica.util.collections
etomica.util.numerical
etomica.util.random
etomica.veos
etomica.veos.bigdecimal
etomica.virial
etomica.virial.cluster
etomica.virial.GUI
etomica.virial.GUI.components
etomica.virial.GUI.containers
etomica.virial.GUI.controllers
etomica.virial.GUI.models
etomica.virial.GUI.views
etomica.virial.overlap
etomica.virial.paralleltempering
etomica.virial.simulations
etomica.zeolite
g3dsys.control
g3dsys.images
org.jmol.api
org.jmol.awt
org.jmol.constant
org.jmol.g3d
org.jmol.script
org.jmol.util
org.jmol.viewer