Package etomica.box

Defines the Box class, which is a container of molecules, and provides means to track activities relating to it.

Interface Summary

Interface	Description
BoxAgentManager.BoxAgentSource<E>	Interface for an object that makes an agent to be associated with each box upon construction.
BoxCellManager	Interface for class that handles assignment of atoms to cells in a box.
BoxEventListener	A box listener receives notifications for box events.
RandomPositionSource	Interface for an object which returns random positions within a box's boundary.

Class Summary

Class	Description
AtomSetAllMolecules	Creates a facade that makes a set of molecule lists look like a single list.
Box	A Box collects all atoms that interact with one another; atoms in different boxes do not interact.
BoxAgentManager<E>	Acts on behalf of client classes (a BoxAgentSource) to manage agents for each Box in a simulation.
BoxAgentSourceAtomManager<E>	BoxAgentSource that creates an AtomLeafAgentManager.
BoxAgentSourceMoleculeManager<E>	BoxAgentSource that creates an MoleculeAgentManager.
BoxAtomEvent	A box event that is somehow related to an atom.
BoxAtomIndexEvent	Box event that indicates that an atom's index has changed.
BoxEvent	A box event fired by the box's event manager.
BoxEventListenerAdapter
BoxEventManager
BoxIndexEvent	Event that conveys that the maximum leaf index in a Box has changed (or is about to change).
BoxMoleculeCountEvent	Box event that indicates the number of molecules of a particular species has changed.
BoxMoleculeEvent	A box event that is somehow related to a molecule.
BoxMoleculeIndexEvent	Box event that indicates that a molecule's index has changed.
RandomPositionSourceDeformable	Implementation of RandomPositionSource that can handle BoundaryDeformablePeriodic.
RandomPositionSourceRectangular