Package etomica.molecule

Class MoleculePair

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<IMolecule>

etomica.molecule.MoleculePair

All Implemented Interfaces:

IMoleculeList, java.lang.Iterable<IMolecule>, java.util.Collection<IMolecule>, java.util.List<IMolecule>, java.util.RandomAccess

public final class MoleculePair
extends java.util.AbstractList<IMolecule>
implements IMoleculeList, java.util.RandomAccess

Data structure that contains two mutable atom instances.

Field Summary

Fields

Modifier and Type	Field	Description
IMolecule	mol0
IMolecule	mol1

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor	Description
MoleculePair()
MoleculePair(IMolecule mol0, IMolecule mol1)

Method Summary

Modifier and Type	Method	Description
void	add(int i, IMolecule iAtom)
boolean	add(IMolecule iAtom)
boolean	addAll(int i, java.util.Collection<? extends IMolecule> collection)
boolean	addAll(java.util.Collection<? extends IMolecule> collection)
void	clear()
boolean	contains(java.lang.Object o)
boolean	equals(java.lang.Object obj)
IMolecule	get(int i)	Returns the i-th molecule, with numbering beginning from 0.
int	hashCode()
int	indexOf(java.lang.Object o)
boolean	isEmpty()
java.util.Iterator<IMolecule>	iterator()
IMolecule	remove(int i)
boolean	remove(java.lang.Object o)
boolean	removeAll(java.util.Collection<?> collection)
boolean	retainAll(java.util.Collection<?> collection)
IMolecule	set(int i, IMolecule iAtom)
int	size()
IMolecule[]	toArray()
java.lang.String	toString()

Methods inherited from class java.util.AbstractCollection

containsAll, toArray

Methods inherited from class java.util.AbstractList

lastIndexOf, listIterator, listIterator, removeRange, subList

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface java.util.List

containsAll, lastIndexOf, listIterator, listIterator, of, of, of, of, of, of, of, of, of, of, of, of, replaceAll, sort, spliterator, subList, toArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

mol0

public IMolecule mol0

mol1

public IMolecule mol1

Constructor Detail

MoleculePair

public MoleculePair()

MoleculePair

public MoleculePair(IMolecule mol0,
                    IMolecule mol1)

Method Detail

equals

public boolean equals(java.lang.Object obj)

Specified by:

equals in interface java.util.Collection<IMolecule>

Specified by:

equals in interface java.util.List<IMolecule>

Overrides:

equals in class java.util.AbstractList<IMolecule>

hashCode

public int hashCode()

Specified by:

hashCode in interface java.util.Collection<IMolecule>

Specified by:

hashCode in interface java.util.List<IMolecule>

Overrides:

hashCode in class java.util.AbstractList<IMolecule>

get

public IMolecule get(int i)

Description copied from interface: IMoleculeList

Returns the i-th molecule, with numbering beginning from 0. If i is greater than count-1, throws an IllegalArgumentException.

Specified by:

get in interface IMoleculeList

Specified by:

get in interface java.util.List<IMolecule>

Specified by:

get in class java.util.AbstractList<IMolecule>

set

public IMolecule set(int i,
                     IMolecule iAtom)

Specified by:

set in interface java.util.List<IMolecule>

Overrides:

set in class java.util.AbstractList<IMolecule>

add

public void add(int i,
                IMolecule iAtom)

Specified by:

add in interface java.util.List<IMolecule>

Overrides:

add in class java.util.AbstractList<IMolecule>

remove

public IMolecule remove(int i)

Specified by:

remove in interface java.util.List<IMolecule>

Overrides:

remove in class java.util.AbstractList<IMolecule>

indexOf

public int indexOf(java.lang.Object o)

Specified by:

indexOf in interface java.util.List<IMolecule>

Overrides:

indexOf in class java.util.AbstractList<IMolecule>

size

public int size()

Specified by:

size in interface java.util.Collection<IMolecule>

Specified by:

size in interface IMoleculeList

Specified by:

size in interface java.util.List<IMolecule>

Specified by:

size in class java.util.AbstractCollection<IMolecule>

Returns:

the number of molecules in the list

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface java.util.Collection<IMolecule>

Specified by:

isEmpty in interface java.util.List<IMolecule>

Overrides:

isEmpty in class java.util.AbstractCollection<IMolecule>

contains

public boolean contains(java.lang.Object o)

Specified by:

contains in interface java.util.Collection<IMolecule>

Specified by:

contains in interface java.util.List<IMolecule>

Overrides:

contains in class java.util.AbstractCollection<IMolecule>

iterator

public java.util.Iterator<IMolecule> iterator()

Specified by:

iterator in interface java.util.Collection<IMolecule>

Specified by:

iterator in interface java.lang.Iterable<IMolecule>

Specified by:

iterator in interface java.util.List<IMolecule>

Overrides:

iterator in class java.util.AbstractList<IMolecule>

toArray

public IMolecule[] toArray()

Specified by:

toArray in interface java.util.Collection<IMolecule>

Specified by:

toArray in interface java.util.List<IMolecule>

Overrides:

toArray in class java.util.AbstractCollection<IMolecule>

add

public boolean add(IMolecule iAtom)

Specified by:

add in interface java.util.Collection<IMolecule>

Specified by:

add in interface java.util.List<IMolecule>

Overrides:

add in class java.util.AbstractList<IMolecule>

remove

public boolean remove(java.lang.Object o)

Specified by:

remove in interface java.util.Collection<IMolecule>

Specified by:

remove in interface java.util.List<IMolecule>

Overrides:

remove in class java.util.AbstractCollection<IMolecule>

addAll

public boolean addAll(java.util.Collection<? extends IMolecule> collection)

Specified by:

addAll in interface java.util.Collection<IMolecule>

Specified by:

addAll in interface java.util.List<IMolecule>

Overrides:

addAll in class java.util.AbstractCollection<IMolecule>

addAll

public boolean addAll(int i,
                      java.util.Collection<? extends IMolecule> collection)

Specified by:

addAll in interface java.util.List<IMolecule>

Overrides:

addAll in class java.util.AbstractList<IMolecule>

removeAll

public boolean removeAll(java.util.Collection<?> collection)

Specified by:

removeAll in interface java.util.Collection<IMolecule>

Specified by:

removeAll in interface java.util.List<IMolecule>

Overrides:

removeAll in class java.util.AbstractCollection<IMolecule>

retainAll

public boolean retainAll(java.util.Collection<?> collection)

Specified by:

retainAll in interface java.util.Collection<IMolecule>

Specified by:

retainAll in interface java.util.List<IMolecule>

Overrides:

retainAll in class java.util.AbstractCollection<IMolecule>

clear

public void clear()

Specified by:

clear in interface java.util.Collection<IMolecule>

Specified by:

clear in interface java.util.List<IMolecule>

Overrides:

clear in class java.util.AbstractList<IMolecule>

toString

public java.lang.String toString()

Overrides:

toString in class java.util.AbstractCollection<IMolecule>