Package etomica.virial

Class ClusterTree

java.lang.Object

etomica.virial.ClusterTree

All Implemented Interfaces:

ClusterAbstract

Direct Known Subclasses:

ClusterTreeEF

public class ClusterTree
extends java.lang.Object
implements ClusterAbstract

Field Summary

Fields

Modifier and Type	Field	Description
protected double	beta
protected ClusterDiagramTree	bondsTree
protected MayerFunction[]	f
protected double[][]	fOld
protected double[][]	fValues
protected int	oldDirtyAtom

Constructor Summary

Constructors

Constructor	Description
ClusterTree(ClusterDiagramTree bonds, MayerFunction[] fArray)

Method Summary

Modifier and Type	Method	Description
ClusterDiagramTree	getBondsTree()
ClusterAbstract	makeCopy()	Returns another instance of an identical cluster (shallow copy).
int	pointCount()	Number of points in the cluster.
protected void	revertF()
void	setTemperature(double temperature)
protected void	updateF(CoordinatePairSet cPairs, AtomPairSet aPairs)
double	value(BoxCluster box)	Value of this cluster for the given pairset at the specified reciprocal temperature.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bondsTree

protected final ClusterDiagramTree bondsTree

f

protected final MayerFunction[] f

fValues

protected final double[][] fValues

beta

protected double beta

fOld

protected final double[][] fOld

oldDirtyAtom

protected int oldDirtyAtom

Constructor Detail

ClusterTree

public ClusterTree(ClusterDiagramTree bonds,
                   MayerFunction[] fArray)

Method Detail

makeCopy

public ClusterAbstract makeCopy()

Description copied from interface: ClusterAbstract

Returns another instance of an identical cluster (shallow copy).

Specified by:

makeCopy in interface ClusterAbstract

pointCount

public int pointCount()

Description copied from interface: ClusterAbstract

Number of points in the cluster.

Specified by:

pointCount in interface ClusterAbstract

Returns:

int

value

public double value(BoxCluster box)

Description copied from interface: ClusterAbstract

Value of this cluster for the given pairset at the specified reciprocal temperature.

Specified by:

value in interface ClusterAbstract

revertF

protected void revertF()

updateF

protected void updateF(CoordinatePairSet cPairs,
                       AtomPairSet aPairs)

setTemperature

public void setTemperature(double temperature)

Specified by:

setTemperature in interface ClusterAbstract

getBondsTree

public ClusterDiagramTree getBondsTree()