Package etomica.virial.cluster

Class ClusterDiagramTree

java.lang.Object

etomica.virial.cluster.ClusterDiagramTree

All Implemented Interfaces:

DiagramSource, java.io.Serializable

public class ClusterDiagramTree
extends java.lang.Object
implements java.io.Serializable, DiagramSource

Holds information about a cluster diagram, including the bonds, root points, and score.

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
protected IRandom	random

Constructor Summary

Constructors

Constructor	Description
ClusterDiagramTree(int numBody, int numBondTypes)	Constructs a cluster having numBody points and numRootPoints root points.

Method Summary

Modifier and Type	Method	Description
void	addClusterDiagram(ClusterDiagram newDiagram)	Adds the given diagram to the tree, adding nodes as needed
void	collapse()
double[]	getLastValues()
int	getNDiagrams()
int	getPickedDiagram()
int	pointCount()
void	setDiagramSampling(boolean flag)
void	setHistogramming(boolean flag)
void	setPrefactor(double f)
void	setRandom(IRandom newRandom)
double	value(double[][] fValues)
void	writeDiagrams()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

random

protected IRandom random

Constructor Detail

ClusterDiagramTree

public ClusterDiagramTree(int numBody,
                          int numBondTypes)

Constructs a cluster having numBody points and numRootPoints root points.

Method Detail

pointCount

public int pointCount()

setPrefactor

public void setPrefactor(double f)

setHistogramming

public void setHistogramming(boolean flag)

setDiagramSampling

public void setDiagramSampling(boolean flag)

setRandom

public void setRandom(IRandom newRandom)

addClusterDiagram

public void addClusterDiagram(ClusterDiagram newDiagram)

Adds the given diagram to the tree, adding nodes as needed

getNDiagrams

public int getNDiagrams()

getLastValues

public double[] getLastValues()

writeDiagrams

public void writeDiagrams()

collapse

public void collapse()

value

public double value(double[][] fValues)

getPickedDiagram

public int getPickedDiagram()

Specified by:

getPickedDiagram in interface DiagramSource