Package etomica.association

Interface IAssociationHelperMolecule

All Known Implementing Classes:

AssociationHelperMolecule

public interface IAssociationHelperMolecule

Interface for a class that is capable of populating a list of molecules in an smer as well as checking the validity of the bonding

Method Summary

Modifier and Type	Method	Description
boolean	populateList(MoleculeArrayList smerList, IMolecule molecule, boolean mightBeBroken)	Populates smerList with all molecules in the smer that contains molecule.

Method Detail

populateList

boolean populateList(MoleculeArrayList smerList,
                     IMolecule molecule,
                     boolean mightBeBroken)

Populates smerList with all molecules in the smer that contains molecule. If mightBeBroken is false, an exception is throw if any invalid bonding is encountered (along with potentially useful information about the invalid bonding). If mightBeBroken is true, then populateList returns true if any invalid bonding is encountered. populateList returns false if invalid bonding is not encountered.