Package etomica.molecule

Class MoleculeArrayList

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractList<IMolecule>

etomica.molecule.MoleculeArrayList

All Implemented Interfaces:

IMoleculeList, java.lang.Iterable<IMolecule>, java.util.Collection<IMolecule>, java.util.List<IMolecule>, java.util.RandomAccess

public final class MoleculeArrayList
extends java.util.AbstractList<IMolecule>
implements IMoleculeList, java.util.RandomAccess

Field Summary

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

Constructors

Constructor	Description
MoleculeArrayList()
MoleculeArrayList(int initialSize)
MoleculeArrayList(java.util.Collection<IMolecule> collection)

Method Summary

Modifier and Type	Method	Description
boolean	add(IMolecule molecule)
boolean	addAll(java.util.Collection<? extends IMolecule> moleculeList)
void	clear()
void	ensureCapacity(int minCapacity)
IMolecule	get(int index)	Returns the i-th molecule, with numbering beginning from 0.
static float	getSizeIncreaseRatio()
float	getTrimThreshold()
int	indexOf(IMolecule elem)
boolean	isEmpty()
void	maybeTrimToSize()
IMolecule	remove(int index)
IMolecule	removeAndReplace(int index)
IMolecule	set(int index, IMolecule element)
void	setTrimThreshold(float newTrimThreshold)
int	size()
int	sizeOfArray()
IMolecule[]	toArray()
IMolecule[]	toMoleculeArray()
void	trimToSize()

Methods inherited from class java.util.AbstractCollection

contains, containsAll, remove, removeAll, retainAll, toArray, toString

Methods inherited from class java.util.AbstractList

add, addAll, equals, hashCode, indexOf, iterator, lastIndexOf, listIterator, listIterator, removeRange, subList

Methods inherited from interface java.util.Collection

parallelStream, removeIf, stream

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface java.util.List

add, addAll, contains, containsAll, equals, hashCode, indexOf, iterator, lastIndexOf, listIterator, listIterator, of, of, of, of, of, of, of, of, of, of, of, of, remove, removeAll, replaceAll, retainAll, sort, spliterator, subList, toArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

MoleculeArrayList

public MoleculeArrayList()

MoleculeArrayList

public MoleculeArrayList(int initialSize)

MoleculeArrayList

public MoleculeArrayList(java.util.Collection<IMolecule> collection)

Method Detail

getSizeIncreaseRatio

public static float getSizeIncreaseRatio()

trimToSize

public void trimToSize()

maybeTrimToSize

public void maybeTrimToSize()

getTrimThreshold

public float getTrimThreshold()

setTrimThreshold

public void setTrimThreshold(float newTrimThreshold)

ensureCapacity

public void ensureCapacity(int minCapacity)

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface java.util.Collection<IMolecule>

Specified by:

isEmpty in interface java.util.List<IMolecule>

Overrides:

isEmpty in class java.util.AbstractCollection<IMolecule>

toArray

public IMolecule[] toArray()

Specified by:

toArray in interface java.util.Collection<IMolecule>

Specified by:

toArray in interface java.util.List<IMolecule>

Overrides:

toArray in class java.util.AbstractCollection<IMolecule>

clear

public void clear()

Specified by:

clear in interface java.util.Collection<IMolecule>

Specified by:

clear in interface java.util.List<IMolecule>

Overrides:

clear in class java.util.AbstractList<IMolecule>

sizeOfArray

public int sizeOfArray()

indexOf

public int indexOf(IMolecule elem)

toMoleculeArray

public IMolecule[] toMoleculeArray()

set

public IMolecule set(int index,
                     IMolecule element)

Specified by:

set in interface java.util.List<IMolecule>

Overrides:

set in class java.util.AbstractList<IMolecule>

add

public boolean add(IMolecule molecule)

Specified by:

add in interface java.util.Collection<IMolecule>

Specified by:

add in interface java.util.List<IMolecule>

Overrides:

add in class java.util.AbstractList<IMolecule>

addAll

public boolean addAll(java.util.Collection<? extends IMolecule> moleculeList)

Specified by:

addAll in interface java.util.Collection<IMolecule>

Specified by:

addAll in interface java.util.List<IMolecule>

Overrides:

addAll in class java.util.AbstractCollection<IMolecule>

remove

public IMolecule remove(int index)

Specified by:

remove in interface java.util.List<IMolecule>

Overrides:

remove in class java.util.AbstractList<IMolecule>

removeAndReplace

public IMolecule removeAndReplace(int index)

size

public int size()

Specified by:

size in interface java.util.Collection<IMolecule>

Specified by:

size in interface IMoleculeList

Specified by:

size in interface java.util.List<IMolecule>

Specified by:

size in class java.util.AbstractCollection<IMolecule>

Returns:

the number of molecules in the list

get

public IMolecule get(int index)

Description copied from interface: IMoleculeList

Returns the i-th molecule, with numbering beginning from 0. If i is greater than count-1, throws an IllegalArgumentException.

Specified by:

get in interface IMoleculeList

Specified by:

get in interface java.util.List<IMolecule>

Specified by:

get in class java.util.AbstractList<IMolecule>