Package etomica.association

Class ColorSchemeSmer

java.lang.Object

etomica.graphics.ColorScheme

etomica.association.ColorSchemeSmer

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<ColorSchemeSmer.ColorAgent>

public class ColorSchemeSmer
extends ColorScheme
implements AtomLeafAgentManager.AgentSource<ColorSchemeSmer.ColorAgent>

Color scheme for smer association. All monomers have the same color and Each smer has a different color.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	ColorSchemeSmer.ColorAgent

Nested classes/interfaces inherited from class etomica.graphics.ColorScheme

ColorScheme.Simple

Field Summary

Fields

Modifier and Type	Field	Description
protected IAssociationHelper	associationHelper
protected AtomLeafAgentManager<ColorSchemeSmer.ColorAgent>	dimerColorManager
protected java.awt.Color	monomerColor
protected java.util.HashMap<java.awt.Color,java.lang.Integer>	oldColors
protected IRandom	random
protected AtomArrayList	smerList

Fields inherited from class etomica.graphics.ColorScheme

DEFAULT_ATOM_COLOR, defaultColor

Constructor Summary

Constructors

Constructor	Description
ColorSchemeSmer(IAssociationHelper associationHelper, Box box, IRandom random)

Method Summary

Modifier and Type	Method	Description
protected boolean	equalLists(AtomArrayList list1, AtomArrayList list2)
java.awt.Color	getAtomColor(IAtom a)
java.awt.Color	getMonomerColor()	Returns the color used for all dimers.
ColorSchemeSmer.ColorAgent	makeAgent(IAtom a, Box agentBox)	Returns an agent for the given Atom.
protected void	reclaim(IAtom atom)
void	releaseAgent(ColorSchemeSmer.ColorAgent agent, IAtom atom, Box agentBox)	This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements.
void	setMonomerColor(java.awt.Color newMonomerColor)	Sets the color used for all dimers.

Methods inherited from class etomica.graphics.ColorScheme

getDefaultColor, main, setDefaultColor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

monomerColor

protected java.awt.Color monomerColor

associationHelper

protected IAssociationHelper associationHelper

dimerColorManager

protected AtomLeafAgentManager<ColorSchemeSmer.ColorAgent> dimerColorManager

random

protected IRandom random

oldColors

protected java.util.HashMap<java.awt.Color,java.lang.Integer> oldColors

smerList

protected final AtomArrayList smerList

Constructor Detail

ColorSchemeSmer

public ColorSchemeSmer(IAssociationHelper associationHelper,
                       Box box,
                       IRandom random)

Method Detail

equalLists

protected boolean equalLists(AtomArrayList list1,
                             AtomArrayList list2)

reclaim

protected void reclaim(IAtom atom)

getAtomColor

public java.awt.Color getAtomColor(IAtom a)

Specified by:

getAtomColor in class ColorScheme

setMonomerColor

public void setMonomerColor(java.awt.Color newMonomerColor)

Sets the color used for all dimers.

getMonomerColor

public java.awt.Color getMonomerColor()

Returns the color used for all dimers.

makeAgent

public ColorSchemeSmer.ColorAgent makeAgent(IAtom a,
                                            Box agentBox)

Description copied from interface: AtomLeafAgentManager.AgentSource

Returns an agent for the given Atom. The agentBox is provided for convenience for agent sources that handle multiple boxes.

Specified by:

makeAgent in interface AtomLeafAgentManager.AgentSource<ColorSchemeSmer.ColorAgent>

agentBox - TODO

releaseAgent

public void releaseAgent(ColorSchemeSmer.ColorAgent agent,
                         IAtom atom,
                         Box agentBox)

Description copied from interface: AtomLeafAgentManager.AgentSource

This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements. The agentBox is provided for convenience for agent sources that handle multiple boxes.

Specified by:

releaseAgent in interface AtomLeafAgentManager.AgentSource<ColorSchemeSmer.ColorAgent>