AssociationDefinition
public class BiasVolumeSphereOrientedDoubleSites extends BiasVolume
space
Constructor | Description |
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BiasVolumeSphereOrientedDoubleSites(Space space,
IRandom random) |
Modifier and Type | Method | Description |
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void |
biasInsert(IAtom atom1,
IAtom atom2) |
|
double |
biasVolume() |
|
double |
getBiasSphereRadius() |
|
double |
getTheta() |
|
boolean |
isAssociated(IAtom atom1,
IAtom atom2) |
Function to check for bonding
calculate the distance between atom1 and atom2
|
void |
setBiasSphereInnerRadius(double innerRadius) |
|
void |
setBiasSphereRadius(double radius) |
|
void |
setBox(Box box) |
|
void |
setTheta(double t) |
Accessor method for angle (in radians) describing width of cone.
|
public void setBox(Box box)
public void setBiasSphereRadius(double radius)
public void setBiasSphereInnerRadius(double innerRadius)
public double getBiasSphereRadius()
public double biasVolume()
biasVolume
in class BiasVolume
public void biasInsert(IAtom atom1, IAtom atom2)
biasInsert
in class BiasVolume
public boolean isAssociated(IAtom atom1, IAtom atom2)
isAssociated
in interface AssociationDefinition
isAssociated
in class BiasVolume
public double getTheta()
public void setTheta(double t)