Package etomica.virial.cluster

Class VirialDiagramsMix

java.lang.Object

etomica.virial.cluster.VirialDiagramsMix

public class VirialDiagramsMix
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
protected java.util.Map<Graph,Graph>	cancelMap
protected java.util.Set<Graph>	cancelP
protected java.util.Set<Graph>	disconnectedP
protected boolean	doKeepEBonds
protected boolean	doMinimalBC
protected boolean	doMinimalMulti
protected boolean	doReeHoover
protected boolean	doShortcut
char	eBond
char	efbcBond
char	excBond
char	fBond
protected boolean[]	flex
protected char[]	flexColors
protected boolean	isInteractive
protected java.util.Set<Graph>	lnfXi
char	mBond
char	MBond
protected boolean[]	multibody
protected java.util.Set<Graph>	multiP
protected int	n
protected char	nodeColor
protected char[]	nodeColors
protected java.util.Set<Graph>	p
protected java.util.Set<Graph>	rhoA
protected java.util.Set<Graph>	rhoB

Constructor Summary

Constructors

Constructor	Description
VirialDiagramsMix(int n, boolean[] multibody, boolean[] flex)
VirialDiagramsMix(int n, boolean[] multibody, boolean[] flex, boolean interactive)

Method Summary

Modifier and Type	Method	Description
static void	main(java.lang.String[] args)
java.util.Set<Graph>	makeGraphList()
void	makeRhoDiagrams()
void	makeVirialDiagrams()
void	setDoKeepEBonds(boolean newDoKeepEBonds)
void	setDoMinimalBC(boolean newDoMinimalBC)
void	setDoMinimalMulti(boolean newDoMinimalMulti)
void	setDoReeHoover(boolean newDoReeHoover)
void	setDoShortcut(boolean newDoShortcut)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

n

protected final int n

nodeColors

protected char[] nodeColors

flex

protected final boolean[] flex

multibody

protected final boolean[] multibody

isInteractive

protected final boolean isInteractive

doReeHoover

protected boolean doReeHoover

p

protected java.util.Set<Graph> p

cancelP

protected java.util.Set<Graph> cancelP

disconnectedP

protected java.util.Set<Graph> disconnectedP

multiP

protected java.util.Set<Graph> multiP

rhoA

protected java.util.Set<Graph> rhoA

rhoB

protected java.util.Set<Graph> rhoB

lnfXi

protected java.util.Set<Graph> lnfXi

cancelMap

protected java.util.Map<Graph,Graph> cancelMap

doShortcut

protected boolean doShortcut

doMinimalMulti

protected boolean doMinimalMulti

doMinimalBC

protected boolean doMinimalBC

doKeepEBonds

protected boolean doKeepEBonds

nodeColor

protected final char nodeColor

See Also:

Constant Field Values

flexColors

protected char[] flexColors

fBond

public char fBond

eBond

public char eBond

excBond

public char excBond

mBond

public char mBond

MBond

public char MBond

efbcBond

public char efbcBond

Constructor Detail

VirialDiagramsMix

public VirialDiagramsMix(int n,
                         boolean[] multibody,
                         boolean[] flex)

VirialDiagramsMix

public VirialDiagramsMix(int n,
                         boolean[] multibody,
                         boolean[] flex,
                         boolean interactive)

Method Detail

main

public static void main(java.lang.String[] args)

setDoReeHoover

public void setDoReeHoover(boolean newDoReeHoover)

setDoShortcut

public void setDoShortcut(boolean newDoShortcut)

setDoKeepEBonds

public void setDoKeepEBonds(boolean newDoKeepEBonds)

setDoMinimalMulti

public void setDoMinimalMulti(boolean newDoMinimalMulti)

setDoMinimalBC

public void setDoMinimalBC(boolean newDoMinimalBC)

makeGraphList

public java.util.Set<Graph> makeGraphList()

makeRhoDiagrams

public void makeRhoDiagrams()

makeVirialDiagrams

public void makeVirialDiagrams()