ClusterWheatleyExtendSW

java.lang.Object
- etomica.virial.ClusterWheatleyExtendSW

All Implemented Interfaces:: ClusterAbstract

public class ClusterWheatleyExtendSW
extends java.lang.Object
implements ClusterAbstract

Field Summary

Fields
Modifier and Type	Field	Description
`protected double`	`beta`
`protected int`	`cliqueCountE2`
`protected int`	`cliqueCountEF`
`protected int`	`cliqueCountF1`
`protected int`	`cliqueCountNone`
`protected int[]`	`cliqueListE2`
`protected int[]`	`cliqueListEF`
`protected int[]`	`cliqueListF1`
`protected int[]`	`cliqueListNone`
`protected boolean[]`	`cliqueSetE2`
`protected boolean[]`	`cliqueSetEF`
`protected boolean[]`	`cliqueSetF1`
`protected boolean[]`	`cliqueSetNone`
`protected MayerFunction`	`e2`
`protected int`	`edgeCountCore`
`protected int`	`edgeCountWell`
`protected MayerFunction`	`f1`
`protected double[][]`	`fA`
`protected double[][]`	`fB`
`protected double[][]`	`fC`
`protected double[][]`	`fQ`
`protected double[]`	`fQQ`
`protected Graph`	`g`
`protected IsBiconnected`	`isB`
`protected int`	`n`
`protected int`	`nf`
`protected int`	`npairs`
`protected int[]`	`outDegreeCore`
`protected int[]`	`outDegreeWell`

Constructor Summary

Constructors
Constructor Description

ClusterWheatleyExtendSW(int nPoints, MayerFunction f1, MayerFunction e2)

Constructors
Constructor	Description
`ClusterWheatleyExtendSW(int nPoints, MayerFunction f1, MayerFunction e2)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`calcFullFQ(BoxCluster box)`	This calculates all FQ values given that the entries for pairs have already been populated.
`double[]`	`calcValue(BoxCluster box)`	Returns the cluster value for the given configuration.
`boolean`	`checkConfig(BoxCluster box)`
`int`	`getCoreEdgeCount()`
`int`	`getE2CliqueCount()`
`int[]`	`getE2Cliques()`
`int`	`getEFCliqueCount()`
`int[]`	`getEFCliques()`
`int`	`getF1CliqueCount()`
`int[]`	`getF1Cliques()`
`int`	`getNoneCliqueCount()`
`int[]`	`getNoneCliques()`
`int[]`	`getOutDegreeCore()`
`int[]`	`getOutDegreeWell()`
`int`	`getWellEdgeCount()`
`ClusterAbstract`	`makeCopy()`	Returns another instance of an identical cluster (shallow copy).
`int`	`pointCount()`	Number of points in the cluster.
`void`	`setTemperature(double temperature)`
`protected void`	`updateF(BoxCluster box)`
`double`	`value(BoxCluster box)`	Value of this cluster for the given pairset at the specified reciprocal temperature.
`double[]`	`valueArray(BoxCluster box)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

n
```
protected final int n
```

nf
```
protected final int nf
```

npairs
```
protected final int npairs
```

f1
```
protected final MayerFunction f1
```

e2
```
protected final MayerFunction e2
```

fQ
```
protected final double[][] fQ
```

fQQ
```
protected final double[] fQQ
```

fC
```
protected final double[][] fC
```

fA
```
protected final double[][] fA
```

fB
```
protected final double[][] fB
```

beta
```
protected double beta
```

isB
```
protected IsBiconnected isB
```

g
```
protected Graph g
```

edgeCountCore
```
protected int edgeCountCore
```

edgeCountWell
```
protected int edgeCountWell
```

outDegreeCore
```
protected final int[] outDegreeCore
```

outDegreeWell
```
protected final int[] outDegreeWell
```

cliqueCountF1
```
protected int cliqueCountF1
```

cliqueCountE2
```
protected int cliqueCountE2
```

cliqueCountEF
```
protected int cliqueCountEF
```

cliqueCountNone
```
protected int cliqueCountNone
```

cliqueSetF1
```
protected final boolean[] cliqueSetF1
```

cliqueSetE2
```
protected final boolean[] cliqueSetE2
```

cliqueSetEF
```
protected final boolean[] cliqueSetEF
```

cliqueSetNone

protected final boolean[] cliqueSetNone

cliqueListF1
```
protected final int[] cliqueListF1
```

cliqueListE2
```
protected final int[] cliqueListE2
```

cliqueListEF
```
protected final int[] cliqueListEF
```

cliqueListNone
```
protected final int[] cliqueListNone
```

Constructor Detail

ClusterWheatleyExtendSW

public ClusterWheatleyExtendSW(int nPoints,
                               MayerFunction f1,
                               MayerFunction e2)

Method Detail
- makeCopy
```
public ClusterAbstract makeCopy()
```
  Description copied from interface: ClusterAbstract
  
  Returns another instance of an identical cluster (shallow copy).
  
  Specified by:
  
  makeCopy in interface ClusterAbstract
- pointCount
```
public int pointCount()
```
  Description copied from interface: ClusterAbstract
  
  Number of points in the cluster.
  
  Specified by:
  
  pointCount in interface ClusterAbstract
  
  Returns:
  
  int
- value
```
public double value(BoxCluster box)
```
  Description copied from interface: ClusterAbstract
  
  Value of this cluster for the given pairset at the specified reciprocal temperature.
  
  Specified by:
  
  value in interface ClusterAbstract
- valueArray
```
public double[] valueArray(BoxCluster box)
```
- updateF
```
protected void updateF(BoxCluster box)
```
- calcFullFQ
```
protected void calcFullFQ(BoxCluster box)
```
  This calculates all FQ values given that the entries for pairs have already been populated.
- calcValue
```
public double[] calcValue(BoxCluster box)
```
  Returns the cluster value for the given configuration.
- setTemperature
```
public void setTemperature(double temperature)
```
  Specified by:
  
  setTemperature in interface ClusterAbstract
- getCoreEdgeCount
```
public int getCoreEdgeCount()
```
- getWellEdgeCount
```
public int getWellEdgeCount()
```
- getOutDegreeCore
```
public int[] getOutDegreeCore()
```
- getOutDegreeWell
```
public int[] getOutDegreeWell()
```
- getF1CliqueCount
```
public int getF1CliqueCount()
```
- getE2CliqueCount
```
public int getE2CliqueCount()
```
- getEFCliqueCount
```
public int getEFCliqueCount()
```
- getNoneCliqueCount
```
public int getNoneCliqueCount()
```
- getF1Cliques
```
public int[] getF1Cliques()
```
- getE2Cliques
```
public int[] getE2Cliques()
```
- getEFCliques
```
public int[] getEFCliques()
```
- getNoneCliques
```
public int[] getNoneCliques()
```
- checkConfig
```
public boolean checkConfig(BoxCluster box)
```

Class ClusterWheatleyExtendSW

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

n

nf

npairs

f1

e2

fQ

fQQ

fC

fA

fB

beta

isB

g

edgeCountCore

edgeCountWell

outDegreeCore

outDegreeWell

cliqueCountF1

cliqueCountE2

cliqueCountEF

cliqueCountNone

cliqueSetF1

cliqueSetE2

cliqueSetEF

cliqueSetNone

cliqueListF1

cliqueListE2

cliqueListEF

cliqueListNone

Constructor Detail

ClusterWheatleyExtendSW

Method Detail

makeCopy

pointCount

value

valueArray

updateF

calcFullFQ

calcValue

setTemperature

getCoreEdgeCount

getWellEdgeCount

getOutDegreeCore

getOutDegreeWell

getF1CliqueCount

getE2CliqueCount

getEFCliqueCount

getNoneCliqueCount

getF1Cliques

getE2Cliques

getEFCliques

getNoneCliques

checkConfig