Package etomica.modules.glass

Class DataSourceMSD

java.lang.Object

etomica.modules.glass.DataSourceMSD

All Implemented Interfaces:

DataSourceIndependent, IDataSource, ConfigurationStorage.ConfigurationStorageListener

public class DataSourceMSD
extends java.lang.Object
implements IDataSource, ConfigurationStorage.ConfigurationStorageListener, DataSourceIndependent

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static interface	DataSourceMSD.MSDSink

Field Summary

Fields

Modifier and Type	Field	Description
protected ConfigurationStorage	configStorage
protected DataFunction	data
protected DataFunction.DataInfoFunction	dataInfo
protected DataFunction	errData
protected int	minInterval
protected double[]	msd2Sum
protected java.util.List<DataSourceMSD.MSDSink>	msdSinks
protected double[]	msdSum
protected double[]	msdSumBlock
protected long[]	nSamples
protected DataTag	tag
protected DataDoubleArray	tData
protected DataDoubleArray.DataInfoDoubleArray	tDataInfo
protected DataTag	tTag
protected AtomType	type

Constructor Summary

Constructors

Constructor	Description
DataSourceMSD(ConfigurationStorage configStorage)
DataSourceMSD(ConfigurationStorage configStorage, AtomType type)

Method Summary

Modifier and Type	Method	Description
void	addMSDSink(DataSourceMSD.MSDSink sink)
IData	getData()
IDataInfo	getDataInfo()
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
DataTag	getTag()
void	newConfigruation()
protected void	reallocate(int n)
void	reset()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

configStorage

protected final ConfigurationStorage configStorage

tData

protected DataDoubleArray tData

tDataInfo

protected DataDoubleArray.DataInfoDoubleArray tDataInfo

data

protected DataFunction data

errData

protected DataFunction errData

dataInfo

protected DataFunction.DataInfoFunction dataInfo

msdSum

protected double[] msdSum

msd2Sum

protected double[] msd2Sum

msdSumBlock

protected double[] msdSumBlock

tTag

protected final DataTag tTag

tag

protected final DataTag tag

nSamples

protected long[] nSamples

type

protected final AtomType type

msdSinks

protected java.util.List<DataSourceMSD.MSDSink> msdSinks

minInterval

protected int minInterval

Constructor Detail

DataSourceMSD

public DataSourceMSD(ConfigurationStorage configStorage)

DataSourceMSD

public DataSourceMSD(ConfigurationStorage configStorage,
                     AtomType type)

Method Detail

reset

public void reset()

reallocate

protected void reallocate(int n)

addMSDSink

public void addMSDSink(DataSourceMSD.MSDSink sink)

getData

public IData getData()

Specified by:

getData in interface IDataSource

Returns:

the data given by this source

getTag

public DataTag getTag()

Specified by:

getTag in interface IDataSource

Returns:

a tag that uniquely identifies the IDataInfo

getDataInfo

public IDataInfo getDataInfo()

Specified by:

getDataInfo in interface IDataSource

newConfigruation

public void newConfigruation()

Specified by:

newConfigruation in interface ConfigurationStorage.ConfigurationStorageListener

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent