Package etomica.modules.chainequilibrium

Class FreeRadicalPolymerizationSim

java.lang.Object

etomica.simulation.Simulation

etomica.modules.chainequilibrium.FreeRadicalPolymerizationSim

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<IAtom[]>

public class FreeRadicalPolymerizationSim
extends Simulation
implements AtomLeafAgentManager.AgentSource<IAtom[]>

Field Summary

Fields

Modifier and Type	Field	Description
AtomLeafAgentManager<IAtom[]>	agentManager
Box	box
ConfigurationLatticeFreeRadical	config
java.awt.Component	display
IntegratorHard	integratorHard
P2SquareWellBonded	p2AA
P2SquareWellRadical	p2AB
P2SquareWellRadical	p2BB
PotentialMaster	potentialMaster
SpeciesGeneral	speciesA
SpeciesGeneral	speciesB

Fields inherited from class etomica.simulation.Simulation

eventManager, random, seeds, space

Constructor Summary

Constructors

Constructor	Description
FreeRadicalPolymerizationSim()
FreeRadicalPolymerizationSim(Space space)

Method Summary

Modifier and Type	Method	Description
AtomLeafAgentManager<IAtom[]>	getAgentManager()
IAtom[]	makeAgent(IAtom a, Box agentBox)	Implementation of AtomAgentManager.AgentSource interface.
void	releaseAgent(IAtom[] agent, IAtom atom, Box agentBox)	This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements.
void	resetBonds()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class etomica.simulation.Simulation

addBox, addSpecies, box, getBox, getBoxCount, getBoxes, getController, getEventManager, getIntegrator, getRandom, getRandomSeeds, getSpace, getSpecies, getSpeciesCount, getSpeciesList, makeBox, makeBox, makeUniqueElementSymbol, removeBox, setRandom, species

Field Detail

potentialMaster

public final PotentialMaster potentialMaster

config

public final ConfigurationLatticeFreeRadical config

integratorHard

public IntegratorHard integratorHard

display

public java.awt.Component display

box

public Box box

speciesA

public SpeciesGeneral speciesA

speciesB

public SpeciesGeneral speciesB

p2AA

public P2SquareWellBonded p2AA

p2AB

public P2SquareWellRadical p2AB

p2BB

public P2SquareWellRadical p2BB

agentManager

public AtomLeafAgentManager<IAtom[]> agentManager

Constructor Detail

FreeRadicalPolymerizationSim

public FreeRadicalPolymerizationSim()

FreeRadicalPolymerizationSim

public FreeRadicalPolymerizationSim(Space space)

Method Detail

resetBonds

public void resetBonds()

makeAgent

public IAtom[] makeAgent(IAtom a,
                         Box agentBox)

Implementation of AtomAgentManager.AgentSource interface. Agent is used to hold bonding partners.

Specified by:

makeAgent in interface AtomLeafAgentManager.AgentSource<IAtom[]>

agentBox - TODO

releaseAgent

public void releaseAgent(IAtom[] agent,
                         IAtom atom,
                         Box agentBox)

Description copied from interface: AtomLeafAgentManager.AgentSource

This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements. The agentBox is provided for convenience for agent sources that handle multiple boxes.

Specified by:

releaseAgent in interface AtomLeafAgentManager.AgentSource<IAtom[]>

getAgentManager

public AtomLeafAgentManager<IAtom[]> getAgentManager()