public class BuilderCollectionPotential
extends java.lang.Object
Constructor | Description |
---|---|
BuilderCollectionPotential() |
Modifier and Type | Method | Description |
---|---|---|
void |
addSpeciesIndextoSites(java.lang.String[] sitesOnSpecies,
int speciesIndex) |
|
void |
checkForSimilarSites(java.lang.String[] sitesOnSpecies1,
java.lang.String[] sitesOnSpecies2,
IMolecularModel_SpeciesFactory[] speciesSelected) |
|
java.util.ArrayList<ICollectionPotential> |
checkIfCompatible(ModelSelectedSpecies speciesDataModel,
ModelSimulationEnvironment SimENV) |
|
int[] |
getElectrostatic() |
|
boolean |
getPairSiteValidation(java.lang.String PotentialSite,
IMolecularModel_SpeciesFactory[] Potential) |
|
java.lang.String[] |
getSitesNotParticipating(IMolecularModel_SpeciesFactory Potential) |
|
boolean |
hasSingleConstructorForPotential(java.lang.Class PotentialClassName) |
|
boolean |
isPotentialSite(java.lang.String PotentialSite,
IMolecularModel_SpeciesFactory Potential) |
|
boolean |
isSpecies1AtomicFlag() |
|
boolean |
isSpecies2AtomicFlag() |
|
void |
makePairPotentialsUnlike(int speciesIndex1,
int speciesIndex2) |
|
void |
setSpecies1AtomicFlag(boolean species1AtomicFlag) |
|
void |
setSpecies2AtomicFlag(boolean species2AtomicFlag) |
public java.util.ArrayList<ICollectionPotential> checkIfCompatible(ModelSelectedSpecies speciesDataModel, ModelSimulationEnvironment SimENV)
public void makePairPotentialsUnlike(int speciesIndex1, int speciesIndex2)
public void addSpeciesIndextoSites(java.lang.String[] sitesOnSpecies, int speciesIndex)
public void checkForSimilarSites(java.lang.String[] sitesOnSpecies1, java.lang.String[] sitesOnSpecies2, IMolecularModel_SpeciesFactory[] speciesSelected)
public int[] getElectrostatic()
public java.lang.String[] getSitesNotParticipating(IMolecularModel_SpeciesFactory Potential)
public boolean getPairSiteValidation(java.lang.String PotentialSite, IMolecularModel_SpeciesFactory[] Potential)
public boolean hasSingleConstructorForPotential(java.lang.Class PotentialClassName)
public boolean isSpecies1AtomicFlag()
public void setSpecies1AtomicFlag(boolean species1AtomicFlag)
public boolean isSpecies2AtomicFlag()
public void setSpecies2AtomicFlag(boolean species2AtomicFlag)
public boolean isPotentialSite(java.lang.String PotentialSite, IMolecularModel_SpeciesFactory Potential)