SimOverlapLJModule

java.lang.Object
- etomica.normalmode.SimOverlapLJModule

```
public class SimOverlapLJModule
extends java.lang.Object
```
Main method that constructs an overlap sampling module to calculate the free energy difference between a harmonic system and a lennard jones solid.

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`static class`	`SimOverlapLJModule.APIPotentialReference`
`static class`	`SimOverlapLJModule.APIPotentialTarget`
`static class`	`SimOverlapLJModule.MeterPotentialEnergyDifference`
`static class`	`SimOverlapLJModule.SimOverlapParam`	Inner class for parameters understood by the HSMD3D constructor

Field Summary

Fields
Modifier and Type	Field	Description
`DataPump[]`	`accumulatorPumps`
`AccumulatorVirialOverlapSingleAverage[]`	`accumulators`
`Basis`	`basis`
`Boundary`	`boundaryHarmonic`
`Boundary`	`boundaryTarget`
`Box`	`boxHarmonic`
`Box`	`boxTarget`
`DataSourceVirialOverlap`	`dsvo`
`IntegratorOverlap`	`integratorOverlap`
`IntegratorBox[]`	`integrators`
`IDataSource[]`	`meters`
`int[]`	`nCells`
`NormalModes`	`normalModes`
`Primitive`	`primitive`
`double`	`refPref`

Constructor Summary

Constructors
Constructor Description

SimOverlapLJModule()

Constructors
Constructor	Description
`SimOverlapLJModule()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type Method Description

static void main(java.lang.String[] args)
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`main(java.lang.String[] args)`

Field Detail

integratorOverlap

public IntegratorOverlap integratorOverlap

dsvo
```
public DataSourceVirialOverlap dsvo
```

integrators
```
public IntegratorBox[] integrators
```

boxTarget
```
public Box boxTarget
```

boxHarmonic
```
public Box boxHarmonic
```

boundaryTarget
```
public Boundary boundaryTarget
```

boundaryHarmonic
```
public Boundary boundaryHarmonic
```

nCells
```
public int[] nCells
```

basis
```
public Basis basis
```

normalModes
```
public NormalModes normalModes
```

primitive
```
public Primitive primitive
```

refPref
```
public double refPref
```

accumulators

public AccumulatorVirialOverlapSingleAverage[] accumulators

accumulatorPumps
```
public DataPump[] accumulatorPumps
```

meters
```
public IDataSource[] meters
```

Constructor Detail
- SimOverlapLJModule
```
public SimOverlapLJModule()
```

Method Detail
- main
```
public static void main(java.lang.String[] args)
```
  Parameters:
  
  args - filename containing simulation parameters
  
  See Also:
  
  SimOverlapLJModule.SimOverlapParam

Class SimOverlapLJModule

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

integratorOverlap

dsvo

integrators

boxTarget

boxHarmonic

boundaryTarget

boundaryHarmonic

nCells

basis

normalModes

primitive

refPref

accumulators

accumulatorPumps

meters

Constructor Detail

SimOverlapLJModule

Method Detail

main