Package etomica.normalmode

Class NormalModes2D

java.lang.Object

etomica.normalmode.NormalModes2D

All Implemented Interfaces:

NormalModes

public class NormalModes2D
extends java.lang.Object
implements NormalModes

Field Summary

Fields

Modifier and Type	Field	Description
protected Basis	basis
protected Boundary	boundary
protected double[][][]	eigenvectors
protected double	harmonicFudge
protected Primitive	primitive
protected Space	space
protected double	temperature
protected WaveVectorFactory	waveVectorFactory

Constructor Summary

Constructors

Constructor	Description
NormalModes2D(Space _space, Boundary boundary, Primitive primitive, Basis basis)

Method Summary

Modifier and Type	Method	Description
double[][][]	getEigenvectors()	First index corresponds to the wave vector; second index gives the eigenvector, and third index gives the elements of the vector.
double[][]	getOmegaSquared()	Returns an array giving the frequencies (squared) corresponding to the normal-mode motions.
WaveVectorFactory	getWaveVectorFactory()	Returns a factory that provides the wave vectors and coefficients for the periodic system.
void	setHarmonicFudge(double newHarmonicFudge)	Set the fudge factor applied to frequencies.
void	setTemperature(double newTemperature)	Set the temperature used for calculating omega-squared.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

eigenvectors

protected double[][][] eigenvectors

waveVectorFactory

protected WaveVectorFactory waveVectorFactory

harmonicFudge

protected double harmonicFudge

temperature

protected double temperature

primitive

protected Primitive primitive

space

protected Space space

basis

protected Basis basis

boundary

protected Boundary boundary

Constructor Detail

NormalModes2D

public NormalModes2D(Space _space,
                     Boundary boundary,
                     Primitive primitive,
                     Basis basis)

Method Detail

getOmegaSquared

public double[][] getOmegaSquared()

Description copied from interface: NormalModes

Returns an array giving the frequencies (squared) corresponding to the normal-mode motions. First index indicates the wave vector, and second index indicates the eigenvector. Length of second index is coordinateDim.

Specified by:

getOmegaSquared in interface NormalModes

getEigenvectors

public double[][][] getEigenvectors()

Description copied from interface: NormalModes

First index corresponds to the wave vector; second index gives the eigenvector, and third index gives the elements of the vector. Length of 2nd and 3rd dimensions is coordinateDim.

Specified by:

getEigenvectors in interface NormalModes

getWaveVectorFactory

public WaveVectorFactory getWaveVectorFactory()

Description copied from interface: NormalModes

Returns a factory that provides the wave vectors and coefficients for the periodic system.

Specified by:

getWaveVectorFactory in interface NormalModes

setHarmonicFudge

public void setHarmonicFudge(double newHarmonicFudge)

Description copied from interface: NormalModes

Set the fudge factor applied to frequencies. The squared-frequencies returned by getOmegaSquared will be the nominal values divided by the given fudge factor. Thus a smaller value of this fudge factor will make for "tighter" harmonic springs, corresponding to to smaller deviation from the lattice sites.

Specified by:

setHarmonicFudge in interface NormalModes

setTemperature

public void setTemperature(double newTemperature)

Description copied from interface: NormalModes

Set the temperature used for calculating omega-squared. Omega-squared is kT/eigenvalue.

Specified by:

setTemperature in interface NormalModes