Package etomica.normalmode

Class DataSourceImposedFEFit

java.lang.Object

etomica.normalmode.DataSourceImposedFEFit

All Implemented Interfaces:

DataSourceIndependent, IDataSource

public class DataSourceImposedFEFit
extends java.lang.Object
implements IDataSource, DataSourceIndependent

Like DataSourceFEHistogram, returns a probability histogram for N based on free energies. However, this class does a weighted average to compute the average defect free energy (weighted by how much each N is visited) and then assumes that the defect free energy is constant for all N. This yields a fairly accurate description fairly quickly and tends to be more accurate for undersampled N values.

Field Summary

Fields

Modifier and Type	Field	Description
protected double	bmu
protected DataFunction	data
protected DataFunction.DataInfoFunction	dataInfo
protected MCMoveInsertDeleteBiased	mcMoveID
protected MCMoveOverlapListener	mcMoveOverlapMeter
protected DataTag	tag
protected DataDoubleArray	xData
protected DataDoubleArray.DataInfoDoubleArray	xDataInfo
protected DataTag	xTag

Constructor Summary

Constructors

Constructor	Description
DataSourceImposedFEFit(MCMoveOverlapListener mcMoveOverlapMeter, MCMoveInsertDeleteBiased mcMoveID, double bmu)

Method Summary

Modifier and Type	Method	Description
IData	getData()
IDataInfo	getDataInfo()
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
DataTag	getTag()
void	setMu(double newBMu)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mcMoveOverlapMeter

protected final MCMoveOverlapListener mcMoveOverlapMeter

data

protected DataFunction data

dataInfo

protected DataFunction.DataInfoFunction dataInfo

xData

protected DataDoubleArray xData

xDataInfo

protected DataDoubleArray.DataInfoDoubleArray xDataInfo

tag

protected final DataTag tag

xTag

protected final DataTag xTag

bmu

protected double bmu

mcMoveID

protected final MCMoveInsertDeleteBiased mcMoveID

Constructor Detail

DataSourceImposedFEFit

public DataSourceImposedFEFit(MCMoveOverlapListener mcMoveOverlapMeter,
                              MCMoveInsertDeleteBiased mcMoveID,
                              double bmu)

Method Detail

setMu

public void setMu(double newBMu)

getData

public IData getData()

Specified by:

getData in interface IDataSource

Returns:

the data given by this source

getTag

public DataTag getTag()

Specified by:

getTag in interface IDataSource

Returns:

a tag that uniquely identifies the IDataInfo

getDataInfo

public IDataInfo getDataInfo()

Specified by:

getDataInfo in interface IDataSource

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent