Package etomica.nbr.list

Class NeighborListManagerSlanty

java.lang.Object

etomica.nbr.list.NeighborListManager

etomica.nbr.list.NeighborListManagerSlanty

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<AtomNeighborLists>, IntegratorListener

public class NeighborListManagerSlanty
extends NeighborListManager

Implements neighbor listing for a slanty box. Because using slanty cells would be hard, we avoid them entirely. Neighbors are found by looping over all pairs of atoms. This is slow, but you're running a solid, right? So you don't really mind.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	NeighborListManagerSlanty.NeighborListSlantyAgentSource	Constructs instances of NeighborListManagerSlanty on behalf of the PotentialMaster

Nested classes/interfaces inherited from class etomica.nbr.list.NeighborListManager

NeighborListManager.AtomPotential1ListSource

Field Summary

Fields

Modifier and Type	Field	Description
protected AtomPair	pair

Fields inherited from class etomica.nbr.list.NeighborListManager

agentManager1Body, agentManager2Body, box, initialized, potentialMaster

Constructor Summary

Constructors

Constructor	Description
NeighborListManagerSlanty(PotentialMasterList potentialMasterList, double range, Box box)	Configures instance for use by the given PotentialMaster.

Method Summary

Modifier and Type	Method	Description
void	addAtomNotify(IAtom atom)	Constructs neighbor lists for the given atom
protected void	neighborSetup()	Reassigns all interacting atoms to cells, then loops over all atom pairs, determines for each pair whether a potential applies to it, and if so, puts each in the other's neighbor list.

Methods inherited from class etomica.nbr.list.NeighborListManager

dispose, ensureDownLists, getDoApplyPBC, getDownList, getEventManager, getNeighborCellManager, getNumUpdates, getPbcEnforcer, getPotential1BodyList, getRange, getUpdateInterval, getUpList, integratorInitialized, integratorStepFinished, integratorStepStarted, isQuiet, makeAgent, releaseAgent, reset, setDoApplyPBC, setQuiet, setRange, setUpdateInterval, updateNbrsIfNeeded

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

pair

protected final AtomPair pair

Constructor Detail

NeighborListManagerSlanty

public NeighborListManagerSlanty(PotentialMasterList potentialMasterList,
                                 double range,
                                 Box box)

Configures instance for use by the given PotentialMaster.

Method Detail

neighborSetup

protected void neighborSetup()

Reassigns all interacting atoms to cells, then loops over all atom pairs, determines for each pair whether a potential applies to it, and if so, puts each in the other's neighbor list. Called by updateNbrsIfNeeded, and by reset.

Overrides:

neighborSetup in class NeighborListManager

addAtomNotify

public void addAtomNotify(IAtom atom)

Constructs neighbor lists for the given atom

Overrides:

addAtomNotify in class NeighborListManager