Package etomica.modules.reactionequilibrium

Class ReactionEquilibrium

java.lang.Object

etomica.simulation.Simulation

etomica.modules.reactionequilibrium.ReactionEquilibrium

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<IAtom>

public class ReactionEquilibrium
extends Simulation
implements AtomLeafAgentManager.AgentSource<IAtom>

Field Summary

Fields

Modifier and Type	Field	Description
P2SquareWellBonded	AAbonded
P2SquareWellBonded	ABbonded
IAtom[]	agents
P2SquareWellBonded	BBbonded
Box	box
java.awt.Component	display
boolean	initializing
IntegratorHard	integratorHard1
MeterDimerFraction	meterDimerFraction
javax.swing.JPanel	panel
SimulationRestart	restartAction
SpeciesGeneral	speciesA
SpeciesGeneral	speciesB
MeterTemperature	thermometer

Fields inherited from class etomica.simulation.Simulation

eventManager, random, seeds, space

Constructor Summary

Constructors

Constructor	Description
ReactionEquilibrium()

Method Summary

Modifier and Type	Method	Description
AtomLeafAgentManager<IAtom>	getAgentManager()
IAtom	makeAgent(IAtom a, Box agentBox)	Implementation of Atom.AgentSource interface.
void	releaseAgent(IAtom agent, IAtom atom, Box agentBox)	This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class etomica.simulation.Simulation

addBox, addSpecies, box, getBox, getBoxCount, getBoxes, getController, getEventManager, getIntegrator, getRandom, getRandomSeeds, getSpace, getSpecies, getSpeciesCount, getSpeciesList, makeBox, makeBox, makeUniqueElementSymbol, removeBox, setRandom, species

Field Detail

panel

public javax.swing.JPanel panel

integratorHard1

public IntegratorHard integratorHard1

display

public java.awt.Component display

box

public Box box

restartAction

public SimulationRestart restartAction

initializing

public boolean initializing

thermometer

public MeterTemperature thermometer

speciesA

public SpeciesGeneral speciesA

speciesB

public SpeciesGeneral speciesB

AAbonded

public P2SquareWellBonded AAbonded

ABbonded

public P2SquareWellBonded ABbonded

BBbonded

public P2SquareWellBonded BBbonded

meterDimerFraction

public MeterDimerFraction meterDimerFraction

agents

public IAtom[] agents

Constructor Detail

ReactionEquilibrium

public ReactionEquilibrium()

Method Detail

getAgentManager

public AtomLeafAgentManager<IAtom> getAgentManager()

makeAgent

public IAtom makeAgent(IAtom a,
                       Box agentBox)

Implementation of Atom.AgentSource interface. Agent is the bonding partner.

Specified by:

makeAgent in interface AtomLeafAgentManager.AgentSource<IAtom>

Parameters:

a - ignored

agentBox - TODO

Returns:

Object always null

releaseAgent

public void releaseAgent(IAtom agent,
                         IAtom atom,
                         Box agentBox)

Description copied from interface: AtomLeafAgentManager.AgentSource

This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements. The agentBox is provided for convenience for agent sources that handle multiple boxes.

Specified by:

releaseAgent in interface AtomLeafAgentManager.AgentSource<IAtom>