Package etomica.modules.glass

Class StructureFactorComponentCorrelation

java.lang.Object

etomica.modules.glass.StructureFactorComponentCorrelation

All Implemented Interfaces:

DataSourceIndependent, DataSinkBlockAveragerSFac.Sink

public class StructureFactorComponentCorrelation
extends java.lang.Object
implements DataSourceIndependent, DataSinkBlockAveragerSFac.Sink

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	StructureFactorComponentCorrelation.Meter
class	StructureFactorComponentCorrelation.Sink

Field Summary

Fields

Modifier and Type	Field	Description
protected ConfigurationStorage	configStorage
protected double[][]	corSum
protected DataFunction[]	data
protected DataFunction.DataInfoFunction[]	dataInfo
protected double[][][]	lastXY
protected int	minInterval
protected long[][]	nSamples2
protected long[][]	nSamplesCor
protected boolean[]	skipNow
protected double[][]	sum2
protected DataTag[]	tag
protected DataDoubleArray	tData
protected DataDoubleArray.DataInfoDoubleArray	tDataInfo
protected DataTag	tTag
protected int[]	wvMap

Constructor Summary

Constructors

Constructor	Description
StructureFactorComponentCorrelation(int[] wvMap, ConfigurationStorage configStorage)
StructureFactorComponentCorrelation(int nWaveVectors, ConfigurationStorage configStorage)

Method Summary

Modifier and Type	Method	Description
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
StructureFactorComponentCorrelation.Meter	makeMeter(int idx)
StructureFactorComponentCorrelation.Sink	makeSink(int idx, MeterStructureFactor meterSFac)
static int[]	makeWaveVectorMap(Vector[] waveVectors, int motionDim)
void	putData(int j, double[][] xyData)
void	putData(int j, IData inputData, double[] phaseAngles)
protected void	reallocate(int n)
void	reset()
void	setMinInterval(int minInterval)
protected void	setTimeData()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

lastXY

protected double[][][] lastXY

corSum

protected double[][] corSum

sum2

protected double[][] sum2

tData

protected DataDoubleArray tData

tDataInfo

protected DataDoubleArray.DataInfoDoubleArray tDataInfo

data

protected final DataFunction[] data

dataInfo

protected final DataFunction.DataInfoFunction[] dataInfo

tag

protected final DataTag[] tag

tTag

protected final DataTag tTag

configStorage

protected final ConfigurationStorage configStorage

nSamplesCor

protected long[][] nSamplesCor

nSamples2

protected long[][] nSamples2

minInterval

protected int minInterval

skipNow

protected boolean[] skipNow

wvMap

protected final int[] wvMap

Constructor Detail

StructureFactorComponentCorrelation

public StructureFactorComponentCorrelation(int nWaveVectors,
                                           ConfigurationStorage configStorage)

StructureFactorComponentCorrelation

public StructureFactorComponentCorrelation(int[] wvMap,
                                           ConfigurationStorage configStorage)

Method Detail

makeWaveVectorMap

public static int[] makeWaveVectorMap(Vector[] waveVectors,
                                      int motionDim)

setMinInterval

public void setMinInterval(int minInterval)

reset

public void reset()

reallocate

protected void reallocate(int n)

setTimeData

protected void setTimeData()

putData

public void putData(int j,
                    double[][] xyData)

Specified by:

putData in interface DataSinkBlockAveragerSFac.Sink

putData

public void putData(int j,
                    IData inputData,
                    double[] phaseAngles)

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent

makeSink

public StructureFactorComponentCorrelation.Sink makeSink(int idx,
                                                         MeterStructureFactor meterSFac)

makeMeter

public StructureFactorComponentCorrelation.Meter makeMeter(int idx)