Package etomica.modules.glass

Class DataSourcePMSDHistory

java.lang.Object

etomica.modules.glass.DataSourcePMSDHistory

All Implemented Interfaces:

DataSourceIndependent, IDataSink, IDataSource, DataSourceMSD.MSDSink

public class DataSourcePMSDHistory
extends java.lang.Object
implements IDataSink, IDataSource, DataSourceIndependent, DataSourceMSD.MSDSink

Field Summary

Fields

Modifier and Type	Field	Description
protected double[]	blockSumX
protected DataFunction	data
protected DataFunction.DataInfoFunction	dataInfo
protected boolean	enabled
protected HistoryScrolling[]	histories
protected IntegratorMD	integrator
protected int	interval
protected double[]	lastSampleMSD
protected double[]	lastSampleX
protected long[]	lastStepMSD
protected long[]	lastStepX
protected long[]	nBlockSamplesX
protected long	step0
protected DataTag	tag
protected DataDoubleArray	xData
protected DataDoubleArray.DataInfoDoubleArray	xDataInfo
protected int	xlog2Interval
protected DataTag	xTag

Constructor Summary

Constructors

Constructor	Description
DataSourcePMSDHistory(IntegratorMD integrator)
DataSourcePMSDHistory(IntegratorMD integrator, int xlog2Interval)

Method Summary

Modifier and Type	Method	Description
IData	getData()
IDataInfo	getDataInfo()
boolean	getEnabled()
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
DataTag	getTag()
void	putData(IData inputData)	Gives data to DataSink for processing, display, or whatever it does.
void	putDataInfo(IDataInfo inputDataInfo)	Informs the DataSink of the type of Data it should expect to receive.
void	putMSD(int log2interval, long step, double msd)
void	reallocate(int n)
void	resetStep0()
void	setEnabled(boolean isEnabled)
void	setInterval(int i)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

xData

protected DataDoubleArray xData

xDataInfo

protected DataDoubleArray.DataInfoDoubleArray xDataInfo

data

protected DataFunction data

dataInfo

protected DataFunction.DataInfoFunction dataInfo

xTag

protected final DataTag xTag

tag

protected final DataTag tag

lastSampleMSD

protected double[] lastSampleMSD

lastSampleX

protected double[] lastSampleX

blockSumX

protected double[] blockSumX

nBlockSamplesX

protected long[] nBlockSamplesX

lastStepMSD

protected long[] lastStepMSD

lastStepX

protected long[] lastStepX

integrator

protected final IntegratorMD integrator

step0

protected long step0

enabled

protected boolean enabled

xlog2Interval

protected final int xlog2Interval

histories

protected HistoryScrolling[] histories

interval

protected int interval

Constructor Detail

DataSourcePMSDHistory

public DataSourcePMSDHistory(IntegratorMD integrator)

DataSourcePMSDHistory

public DataSourcePMSDHistory(IntegratorMD integrator,
                             int xlog2Interval)

Method Detail

resetStep0

public void resetStep0()

setInterval

public void setInterval(int i)

reallocate

public void reallocate(int n)

setEnabled

public void setEnabled(boolean isEnabled)

getEnabled

public boolean getEnabled()

getData

public IData getData()

Specified by:

getData in interface IDataSource

Returns:

the data given by this source

getTag

public DataTag getTag()

Specified by:

getTag in interface IDataSource

Returns:

a tag that uniquely identifies the IDataInfo

putData

public void putData(IData inputData)

Description copied from interface: IDataSink

Gives data to DataSink for processing, display, or whatever it does.

Specified by:

putData in interface IDataSink

putDataInfo

public void putDataInfo(IDataInfo inputDataInfo)

Description copied from interface: IDataSink

Informs the DataSink of the type of Data it should expect to receive.

Specified by:

putDataInfo in interface IDataSink

getDataInfo

public IDataInfo getDataInfo()

Specified by:

getDataInfo in interface IDataSource

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent

putMSD

public void putMSD(int log2interval,
                   long step,
                   double msd)

Specified by:

putMSD in interface DataSourceMSD.MSDSink