Package etomica.modules.glass

Class DataSourceMSDcorP

java.lang.Object

etomica.modules.glass.DataSourceMSDcorP

All Implemented Interfaces:

DataSourceIndependent, IDataSink, IDataSource, DataSourceMSD.MSDSink

public class DataSourceMSDcorP
extends java.lang.Object
implements IDataSink, IDataSource, DataSourceIndependent, DataSourceMSD.MSDSink

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	DataSourceMSDcorP.DataSourceMSDcovP	Returns the covariance of the MSD with P, divided by t

Field Summary

Fields

Modifier and Type	Field	Description
protected double[]	blockSumX
protected DataFunction	covData
protected DataFunction.DataInfoFunction	covDataInfo
protected DataTag	covTag
protected DataFunction	data
protected DataFunction.DataInfoFunction	dataInfo
protected boolean	enabled
protected IntegratorMD	integrator
protected double[]	lastSampleMSD
protected double[]	lastSampleX
protected long[]	lastStepMSD
protected long[]	lastStepX
protected double[]	msd2Sum
protected double[]	msdSum
protected long[]	nBlockSamplesX
protected long[]	nSamples
protected long	step0
protected DataTag	tag
protected DataDoubleArray	tData
protected DataDoubleArray.DataInfoDoubleArray	tDataInfo
protected DataTag	tTag
protected double[]	x2Sum
protected int	xlog2Interval
protected double[]	xmsdSum
protected double[]	xSum

Constructor Summary

Constructors

Constructor	Description
DataSourceMSDcorP(IntegratorMD integrator)
DataSourceMSDcorP(IntegratorMD integrator, int xlog2Interval)

Method Summary

Modifier and Type	Method	Description
IData	getData()
IDataInfo	getDataInfo()
boolean	getEnabled()
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
DataTag	getTag()
DataSourceMSDcorP.DataSourceMSDcovP	makeCov()
void	putData(IData inputData)	Gives data to DataSink for processing, display, or whatever it does.
void	putDataInfo(IDataInfo inputDataInfo)	Informs the DataSink of the type of Data it should expect to receive.
void	putMSD(int log2interval, long step, double msd)
void	reallocate(int n)
void	resetStep0()
void	setEnabled(boolean isEnabled)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

tData

protected DataDoubleArray tData

tDataInfo

protected DataDoubleArray.DataInfoDoubleArray tDataInfo

data

protected DataFunction data

covData

protected DataFunction covData

dataInfo

protected DataFunction.DataInfoFunction dataInfo

covDataInfo

protected DataFunction.DataInfoFunction covDataInfo

msdSum

protected double[] msdSum

xSum

protected double[] xSum

xmsdSum

protected double[] xmsdSum

msd2Sum

protected double[] msd2Sum

x2Sum

protected double[] x2Sum

tTag

protected final DataTag tTag

tag

protected final DataTag tag

covTag

protected final DataTag covTag

nSamples

protected long[] nSamples

lastSampleMSD

protected double[] lastSampleMSD

lastSampleX

protected double[] lastSampleX

blockSumX

protected double[] blockSumX

nBlockSamplesX

protected long[] nBlockSamplesX

lastStepMSD

protected long[] lastStepMSD

lastStepX

protected long[] lastStepX

integrator

protected final IntegratorMD integrator

step0

protected long step0

enabled

protected boolean enabled

xlog2Interval

protected final int xlog2Interval

Constructor Detail

DataSourceMSDcorP

public DataSourceMSDcorP(IntegratorMD integrator)

DataSourceMSDcorP

public DataSourceMSDcorP(IntegratorMD integrator,
                         int xlog2Interval)

Method Detail

resetStep0

public void resetStep0()

reallocate

public void reallocate(int n)

setEnabled

public void setEnabled(boolean isEnabled)

getEnabled

public boolean getEnabled()

getData

public IData getData()

Specified by:

getData in interface IDataSource

Returns:

the data given by this source

getTag

public DataTag getTag()

Specified by:

getTag in interface IDataSource

Returns:

a tag that uniquely identifies the IDataInfo

putData

public void putData(IData inputData)

Description copied from interface: IDataSink

Gives data to DataSink for processing, display, or whatever it does.

Specified by:

putData in interface IDataSink

putDataInfo

public void putDataInfo(IDataInfo inputDataInfo)

Description copied from interface: IDataSink

Informs the DataSink of the type of Data it should expect to receive.

Specified by:

putDataInfo in interface IDataSink

getDataInfo

public IDataInfo getDataInfo()

Specified by:

getDataInfo in interface IDataSource

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent

putMSD

public void putMSD(int log2interval,
                   long step,
                   double msd)

Specified by:

putMSD in interface DataSourceMSD.MSDSink

makeCov

public DataSourceMSDcorP.DataSourceMSDcovP makeCov()