Package etomica.modules.glass

Class DataSourceBlockAvgCor

java.lang.Object

etomica.modules.glass.DataSourceBlockAvgCor

All Implemented Interfaces:

DataSourceIndependent, IDataSink, IDataSource

Direct Known Subclasses:

DataSourceCorMSD

public class DataSourceBlockAvgCor
extends java.lang.Object
implements IDataSink, IDataSource, DataSourceIndependent

Measures correlation of blocks of increasing size.

Field Summary

Fields

Modifier and Type	Field	Description
protected double[]	blockSumX
protected DataFunction	corPData
protected DataFunction.DataInfoFunction	corPDataInfo
protected DataTag	corPTag
protected double[]	corSumX
protected boolean	enabled
protected double[]	firstSampleX
protected IntegratorMD	integrator
protected double[]	lastSampleX
protected int	minInterval
protected long[]	nSamplesCorX
protected long	step0
protected DataDoubleArray	tData
protected DataDoubleArray.DataInfoDoubleArray	tDataInfo
protected DataTag	tTag
protected double[]	x2Sum
protected double[]	xSum

Constructor Summary

Constructors

Constructor	Description
DataSourceBlockAvgCor(IntegratorMD integrator)

Method Summary

Modifier and Type	Method	Description
IData	getData()
IDataInfo	getDataInfo()
boolean	getEnabled()
int	getIndependentArrayDimension()	Returns the number of independent data dimensions
DataDoubleArray	getIndependentData(int i)	Returns the X data for the given dimension
DataDoubleArray.DataInfoDoubleArray	getIndependentDataInfo(int i)	Returns the DataInfo for the given dimension
DataTag	getIndependentTag()	Returns the tag associated with this DataSource.
DataTag	getTag()
protected double	processData(int interval, long step, double blockAvg)
void	putData(IData inputData)	Gives data to DataSink for processing, display, or whatever it does.
void	putDataInfo(IDataInfo inputDataInfo)	Informs the DataSink of the type of Data it should expect to receive.
protected void	reallocate(int n)
void	resetStep0()
void	setEnabled(boolean isEnabled)
void	setMinInterval(int minInterval)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

tData

protected DataDoubleArray tData

tDataInfo

protected DataDoubleArray.DataInfoDoubleArray tDataInfo

corPData

protected DataFunction corPData

corPDataInfo

protected DataFunction.DataInfoFunction corPDataInfo

xSum

protected double[] xSum

x2Sum

protected double[] x2Sum

tTag

protected final DataTag tTag

corPTag

protected final DataTag corPTag

nSamplesCorX

protected long[] nSamplesCorX

lastSampleX

protected double[] lastSampleX

firstSampleX

protected double[] firstSampleX

blockSumX

protected double[] blockSumX

corSumX

protected double[] corSumX

integrator

protected final IntegratorMD integrator

step0

protected long step0

enabled

protected boolean enabled

minInterval

protected int minInterval

Constructor Detail

DataSourceBlockAvgCor

public DataSourceBlockAvgCor(IntegratorMD integrator)

Method Detail

setMinInterval

public void setMinInterval(int minInterval)

resetStep0

public void resetStep0()

reallocate

protected void reallocate(int n)

setEnabled

public void setEnabled(boolean isEnabled)

getEnabled

public boolean getEnabled()

getData

public IData getData()

Specified by:

getData in interface IDataSource

Returns:

the data given by this source

getTag

public DataTag getTag()

Specified by:

getTag in interface IDataSource

Returns:

a tag that uniquely identifies the IDataInfo

putData

public void putData(IData inputData)

Description copied from interface: IDataSink

Gives data to DataSink for processing, display, or whatever it does.

Specified by:

putData in interface IDataSink

processData

protected double processData(int interval,
                             long step,
                             double blockAvg)

putDataInfo

public void putDataInfo(IDataInfo inputDataInfo)

Description copied from interface: IDataSink

Informs the DataSink of the type of Data it should expect to receive.

Specified by:

putDataInfo in interface IDataSink

getDataInfo

public IDataInfo getDataInfo()

Specified by:

getDataInfo in interface IDataSource

getIndependentData

public DataDoubleArray getIndependentData(int i)

Description copied from interface: DataSourceIndependent

Returns the X data for the given dimension

Specified by:

getIndependentData in interface DataSourceIndependent

getIndependentDataInfo

public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)

Description copied from interface: DataSourceIndependent

Returns the DataInfo for the given dimension

Specified by:

getIndependentDataInfo in interface DataSourceIndependent

getIndependentArrayDimension

public int getIndependentArrayDimension()

Description copied from interface: DataSourceIndependent

Returns the number of independent data dimensions

Specified by:

getIndependentArrayDimension in interface DataSourceIndependent

getIndependentTag

public DataTag getIndependentTag()

Description copied from interface: DataSourceIndependent

Returns the tag associated with this DataSource.

Specified by:

getIndependentTag in interface DataSourceIndependent