Package etomica.modules.glass

Class DataClusterer

java.lang.Object

etomica.modules.glass.DataClusterer

All Implemented Interfaces:

IDataSink

public class DataClusterer
extends java.lang.Object
implements IDataSink

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	DataClusterer.PressureSink

Field Summary

Fields

Modifier and Type	Field	Description
protected java.util.List<float[]>	allData
protected float[][]	centers
protected java.lang.String	clusterOutName
protected double[]	clusterP
protected int[]	clusterPop
protected int[]	clusters
protected double	d2Max
protected boolean	first
protected int[][]	iBondCount
protected int[][]	iBonds
protected int	maxIterations
protected double	nbrDistance
protected int	nDataP
protected int	nSamplesP
protected double[]	pData
protected double	pSum
protected IRandom	random
protected int	totalBondCount

Constructor Summary

Constructors

Constructor	Description
DataClusterer(int nClusters, IRandom random)

Method Summary

Modifier and Type	Method	Description
void	computePopulation()
void	findClusters()
double	getClusterNeighborDistance()
double	getMaxClusterDistance()
int	getMaxIterations()
int	getNumClusters()
DataClusterer.PressureSink	makePressureSink()
void	putData(IData data)	Gives data to DataSink for processing, display, or whatever it does.
void	putDataInfo(IDataInfo inputDataInfo)	Informs the DataSink of the type of Data it should expect to receive.
void	readClusterFile(java.lang.String filename)
void	reset()
void	setClusterFileOut(java.lang.String clusterOutName)
void	setClusterNeighborDistance(double d)
void	setMaxClusterDistance(double dMax)
void	setMaxIterations(int maxIterations)
void	setNumClusters(int nClusters)
void	writeGraph(java.lang.String filename)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

centers

protected float[][] centers

allData

protected final java.util.List<float[]> allData

first

protected boolean first

clusterPop

protected int[] clusterPop

clusters

protected int[] clusters

nbrDistance

protected double nbrDistance

random

protected final IRandom random

d2Max

protected double d2Max

maxIterations

protected int maxIterations

nDataP

protected int nDataP

nSamplesP

protected int nSamplesP

pSum

protected double pSum

pData

protected double[] pData

totalBondCount

protected int totalBondCount

clusterP

protected double[] clusterP

iBonds

protected int[][] iBonds

iBondCount

protected int[][] iBondCount

clusterOutName

protected java.lang.String clusterOutName

Constructor Detail

DataClusterer

public DataClusterer(int nClusters,
                     IRandom random)

Method Detail

setNumClusters

public void setNumClusters(int nClusters)

getNumClusters

public int getNumClusters()

putData

public void putData(IData data)

Description copied from interface: IDataSink

Gives data to DataSink for processing, display, or whatever it does.

Specified by:

putData in interface IDataSink

reset

public void reset()

setClusterNeighborDistance

public void setClusterNeighborDistance(double d)

getClusterNeighborDistance

public double getClusterNeighborDistance()

setMaxClusterDistance

public void setMaxClusterDistance(double dMax)

getMaxClusterDistance

public double getMaxClusterDistance()

getMaxIterations

public int getMaxIterations()

setMaxIterations

public void setMaxIterations(int maxIterations)

readClusterFile

public void readClusterFile(java.lang.String filename)

computePopulation

public void computePopulation()

writeGraph

public void writeGraph(java.lang.String filename)

setClusterFileOut

public void setClusterFileOut(java.lang.String clusterOutName)

findClusters

public void findClusters()

putDataInfo

public void putDataInfo(IDataInfo inputDataInfo)

Description copied from interface: IDataSink

Informs the DataSink of the type of Data it should expect to receive.

Specified by:

putDataInfo in interface IDataSink

makePressureSink

public DataClusterer.PressureSink makePressureSink()