Package etomica.modules.glass

Class AtomNbrClusterer

java.lang.Object

etomica.modules.glass.AtomNbrClusterer

public class AtomNbrClusterer
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field	Description
protected AtomTest	atomTestDeviation
protected Box	box
protected int[]	clusters
protected boolean	doNbrs
protected Vector	dr
protected int[]	firstAtoms
protected int[]	lastAtoms
protected int[][]	nbrList
protected double	nbrMax2
protected int[]	nextAtom
protected int[]	skip

Constructor Summary

Constructors

Constructor	Description
AtomNbrClusterer(Box box, AtomTest atomTest)
AtomNbrClusterer(Box box, AtomTest atomTest, boolean doNbrs)

Method Summary

Modifier and Type	Method	Description
void	findClusters()
int[]	getClusters()
int[]	getFirstAtom()
double	getNbrMax()
int[]	getNextAtom()
void	setNbrMax(double nbrMax)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

box

protected final Box box

dr

protected final Vector dr

nbrMax2

protected double nbrMax2

atomTestDeviation

protected final AtomTest atomTestDeviation

clusters

protected final int[] clusters

nbrList

protected final int[][] nbrList

nextAtom

protected final int[] nextAtom

firstAtoms

protected final int[] firstAtoms

lastAtoms

protected final int[] lastAtoms

skip

protected final int[] skip

doNbrs

protected final boolean doNbrs

Constructor Detail

AtomNbrClusterer

public AtomNbrClusterer(Box box,
                        AtomTest atomTest)

AtomNbrClusterer

public AtomNbrClusterer(Box box,
                        AtomTest atomTest,
                        boolean doNbrs)

Method Detail

getClusters

public int[] getClusters()

getNextAtom

public int[] getNextAtom()

getFirstAtom

public int[] getFirstAtom()

setNbrMax

public void setNbrMax(double nbrMax)

getNbrMax

public double getNbrMax()

findClusters

public void findClusters()