Package etomica.modules.dcvgcmd

Class ConfigurationLatticeTube

java.lang.Object

etomica.config.ConfigurationLattice

etomica.modules.dcvgcmd.ConfigurationLatticeTube

All Implemented Interfaces:

Configuration

public class ConfigurationLatticeTube
extends ConfigurationLattice

Creates a configuration using a CubicLattice to specify positions. Has capability to assign lattice site to atoms when specifying their coordinates. See setAssigningSitesToAtoms method.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class etomica.config.ConfigurationLattice

ConfigurationLattice.MyLattice

Field Summary

Fields

Modifier and Type	Field	Description
protected SpeciesGeneral[]	speciesSpheres
protected SpeciesGeneral	speciesTube

Fields inherited from class etomica.config.ConfigurationLattice

boundaryPadding, lattice, myLat, positionDefinition, rescalingToFitVolume, space

Constructor Summary

Constructors

Constructor	Description
ConfigurationLatticeTube(BravaisLatticeCrystal lattice, double length, IndexIteratorSizable indexIterator, Space _space)	Constructor for ConfigurationLatticeTube.
ConfigurationLatticeTube(BravaisLatticeCrystal lattice, double length, Space _space)

Method Summary

Modifier and Type	Method	Description
void	initializeCoordinates(Box box)	Places the molecules in the given box on the positions of the lattice.
void	setSpeciesSpheres(SpeciesGeneral[] speciesSpheres)
void	setSpeciesTube(SpeciesGeneral speciesTube)

Methods inherited from class etomica.config.ConfigurationLattice

calculateLatticeDimensions, getBoundaryPadding, getLatticeMemento, initializeCoordinates, isRescalingToFitVolume, setBoundaryPadding, setRescalingToFitVolume

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

speciesSpheres

protected SpeciesGeneral[] speciesSpheres

speciesTube

protected SpeciesGeneral speciesTube

Constructor Detail

ConfigurationLatticeTube

public ConfigurationLatticeTube(BravaisLatticeCrystal lattice,
                                double length,
                                Space _space)

ConfigurationLatticeTube

public ConfigurationLatticeTube(BravaisLatticeCrystal lattice,
                                double length,
                                IndexIteratorSizable indexIterator,
                                Space _space)

Constructor for ConfigurationLatticeTube.

Method Detail

setSpeciesSpheres

public void setSpeciesSpheres(SpeciesGeneral[] speciesSpheres)

setSpeciesTube

public void setSpeciesTube(SpeciesGeneral speciesTube)

initializeCoordinates

public void initializeCoordinates(Box box)

Description copied from class: ConfigurationLattice

Places the molecules in the given box on the positions of the lattice.

Specified by:

initializeCoordinates in interface Configuration

Overrides:

initializeCoordinates in class ConfigurationLattice