Package etomica.modules.colloid

Class NeighborListManagerColloid

java.lang.Object

etomica.nbr.list.NeighborListManager

etomica.modules.colloid.NeighborListManagerColloid

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<AtomNeighborLists>, IntegratorListener

public class NeighborListManagerColloid
extends NeighborListManager

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	NeighborListManagerColloid.NeighborListAgentSourceColloid

Nested classes/interfaces inherited from class etomica.nbr.list.NeighborListManager

NeighborListManager.AtomPotential1ListSource

Field Summary

Fields

Modifier and Type	Field	Description
protected int	chainLength
protected IPotentialAtomic	p2mc
protected IPotentialAtomic	p2pseudo
protected ISpecies	speciesColloid
protected ISpecies	speciesMonomer

Fields inherited from class etomica.nbr.list.NeighborListManager

agentManager1Body, agentManager2Body, box, initialized, potentialMaster

Constructor Summary

Constructors

Constructor	Description
NeighborListManagerColloid(PotentialMasterList potentialMasterList, double range, Box box)

Method Summary

Modifier and Type	Method	Description
protected void	neighborSetup()	Reassigns all interacting atoms to cells, then loops over all cell-list neighbor pairs, determines for each pair whether a potential applies to it, and if so, puts each in the other's neighbor list.
void	setChainLength(int newChainLength)
void	setPotentialMC(IPotentialAtomic newPotentailMC)
void	setPotentialPseudo(IPotentialAtomic newPotentailPseudo)
void	setSpeciesColloid(ISpecies newSpeciesColloid)
void	setSpeciesMonomer(ISpecies newSpeciesMonomer)

Methods inherited from class etomica.nbr.list.NeighborListManager

addAtomNotify, dispose, ensureDownLists, getDoApplyPBC, getDownList, getEventManager, getNeighborCellManager, getNumUpdates, getPbcEnforcer, getPotential1BodyList, getRange, getUpdateInterval, getUpList, integratorInitialized, integratorStepFinished, integratorStepStarted, isQuiet, makeAgent, releaseAgent, reset, setDoApplyPBC, setQuiet, setRange, setUpdateInterval, updateNbrsIfNeeded

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

speciesColloid

protected ISpecies speciesColloid

speciesMonomer

protected ISpecies speciesMonomer

p2mc

protected IPotentialAtomic p2mc

p2pseudo

protected IPotentialAtomic p2pseudo

chainLength

protected int chainLength

Constructor Detail

NeighborListManagerColloid

public NeighborListManagerColloid(PotentialMasterList potentialMasterList,
                                  double range,
                                  Box box)

Method Detail

setSpeciesColloid

public void setSpeciesColloid(ISpecies newSpeciesColloid)

setPotentialMC

public void setPotentialMC(IPotentialAtomic newPotentailMC)

setSpeciesMonomer

public void setSpeciesMonomer(ISpecies newSpeciesMonomer)

setPotentialPseudo

public void setPotentialPseudo(IPotentialAtomic newPotentailPseudo)

setChainLength

public void setChainLength(int newChainLength)

neighborSetup

protected void neighborSetup()

Description copied from class: NeighborListManager

Reassigns all interacting atoms to cells, then loops over all cell-list neighbor pairs, determines for each pair whether a potential applies to it, and if so, puts each in the other's neighbor list. Called by updateNbrsIfNeeded, and by reset.

Overrides:

neighborSetup in class NeighborListManager