Package etomica.modules.colloid

Class ConfigurationColloid

java.lang.Object

etomica.modules.colloid.ConfigurationColloid

All Implemented Interfaces:

Configuration

public class ConfigurationColloid
extends java.lang.Object
implements Configuration

Field Summary

Fields

Modifier and Type	Field	Description
protected int	chainLength
protected AtomLeafAgentManager	colloidMonomerBondManager
protected Vector[]	graftVectors
protected AtomLeafAgentManager	monomerMonomerBondManager
protected int	nGraft
protected IRandom	random
protected double	sigmaColloid
protected double	sigmaMonomer
protected Space	space
protected ISpecies	species
protected ISpecies	speciesColloid

Constructor Summary

Constructors

Constructor	Description
ConfigurationColloid(Space space, ISpecies species, ISpecies speciesColloid, IRandom random)

Method Summary

Modifier and Type	Method	Description
int	getChainLength()
int	getNGraft()
double	getSigmaColloid()
double	getSigmaMonomer()
void	initializeCoordinates(Box box)	Defines the placement of the molecules.
void	setChainLength(int newChainLength)
void	setColloidMonomerBondManager(AtomLeafAgentManager newColloidMonomerBondManager)
void	setMonomerMonomerBondManager(AtomLeafAgentManager newMonomerMonomerBondManager)
void	setNGraft(int newNGraft)
void	setSigmaColloid(double newSigmaColloid)
void	setSigmaMonomer(double newSigmaMonomer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

space

protected final Space space

species

protected ISpecies species

speciesColloid

protected ISpecies speciesColloid

chainLength

protected int chainLength

nGraft

protected int nGraft

graftVectors

protected Vector[] graftVectors

sigmaColloid

protected double sigmaColloid

sigmaMonomer

protected double sigmaMonomer

monomerMonomerBondManager

protected AtomLeafAgentManager monomerMonomerBondManager

colloidMonomerBondManager

protected AtomLeafAgentManager colloidMonomerBondManager

random

protected final IRandom random

Constructor Detail

ConfigurationColloid

public ConfigurationColloid(Space space,
                            ISpecies species,
                            ISpecies speciesColloid,
                            IRandom random)

Method Detail

setChainLength

public void setChainLength(int newChainLength)

getChainLength

public int getChainLength()

setNGraft

public void setNGraft(int newNGraft)

getNGraft

public int getNGraft()

setSigmaColloid

public void setSigmaColloid(double newSigmaColloid)

setSigmaMonomer

public void setSigmaMonomer(double newSigmaMonomer)

getSigmaColloid

public double getSigmaColloid()

getSigmaMonomer

public double getSigmaMonomer()

setMonomerMonomerBondManager

public void setMonomerMonomerBondManager(AtomLeafAgentManager newMonomerMonomerBondManager)

setColloidMonomerBondManager

public void setColloidMonomerBondManager(AtomLeafAgentManager newColloidMonomerBondManager)

initializeCoordinates

public void initializeCoordinates(Box box)

Description copied from interface: Configuration

Defines the placement of the molecules. Atoms in all lists are considered for placement. Subclasses define the specific algorithm for placement, and for interpretation of the different lists. Some subclasses will simply place all atoms as if they are in a single list, while others will place atoms in different lists in different ways, for example to form a lattice appropriate to a compound (i.e., a solid-box mixture).

Specified by:

initializeCoordinates in interface Configuration