Package etomica.modules.chainequilibrium

Class ChainEquilibriumSim

java.lang.Object

etomica.simulation.Simulation

etomica.modules.chainequilibrium.ChainEquilibriumSim

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<IAtom[]>

public class ChainEquilibriumSim
extends Simulation
implements AtomLeafAgentManager.AgentSource<IAtom[]>

Field Summary

Fields

Modifier and Type	Field	Description
P2SquareWellBonded	ABbonded
AtomLeafAgentManager<IAtom[]>	agentManager
Box	box
ConfigurationLatticeRandom	config
java.awt.Component	display
IntegratorHard	integratorHard
int	nCrossLinkersAcid
int	nDiAcid
int	nDiol
int	nMonoAcid
int	nMonoOl
P2HardSphere	p2AA
P2HardSphere	p2BB
PotentialMaster	potentialMaster
SpeciesGeneral	speciesA
SpeciesGeneral	speciesB
MeterTemperature	thermometer

Fields inherited from class etomica.simulation.Simulation

eventManager, random, seeds, space

Constructor Summary

Constructors

Constructor	Description
ChainEquilibriumSim(Space space)

Method Summary

Modifier and Type	Method	Description
AtomLeafAgentManager<IAtom[]>	getAgentManager()
int	getNCrossLinkersAcid()
int	getNDiAcid()
int	getNDiol()
int	getNMonoAcid()
int	getNMonoOl()
IAtom[]	makeAgent(IAtom a, Box agentBox)	Implementation of AtomAgentManager.AgentSource interface.
void	releaseAgent(IAtom[] agent, IAtom atom, Box agentBox)	This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements.
void	resetBonds()
void	setNCrossLinkersAcid(int crossLinkersAcid)
void	setNDiAcid(int diAcid)
void	setNDiol(int diol)
void	setNMonoAcid(int monoAcid)
void	setNMonoOl(int monoOl)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from class etomica.simulation.Simulation

addBox, addSpecies, box, getBox, getBoxCount, getBoxes, getController, getEventManager, getIntegrator, getRandom, getRandomSeeds, getSpace, getSpecies, getSpeciesCount, getSpeciesList, makeBox, makeBox, makeUniqueElementSymbol, removeBox, setRandom, species

Field Detail

potentialMaster

public final PotentialMaster potentialMaster

config

public final ConfigurationLatticeRandom config

integratorHard

public IntegratorHard integratorHard

display

public java.awt.Component display

box

public Box box

thermometer

public MeterTemperature thermometer

speciesA

public SpeciesGeneral speciesA

speciesB

public SpeciesGeneral speciesB

p2AA

public P2HardSphere p2AA

p2BB

public P2HardSphere p2BB

ABbonded

public P2SquareWellBonded ABbonded

agentManager

public AtomLeafAgentManager<IAtom[]> agentManager

nCrossLinkersAcid

public int nCrossLinkersAcid

nDiol

public int nDiol

nDiAcid

public int nDiAcid

nMonoOl

public int nMonoOl

nMonoAcid

public int nMonoAcid

Constructor Detail

ChainEquilibriumSim

public ChainEquilibriumSim(Space space)

Method Detail

getNMonoOl

public int getNMonoOl()

setNMonoOl

public void setNMonoOl(int monoOl)

getNMonoAcid

public int getNMonoAcid()

setNMonoAcid

public void setNMonoAcid(int monoAcid)

getNDiol

public int getNDiol()

setNDiol

public void setNDiol(int diol)

getNDiAcid

public int getNDiAcid()

setNDiAcid

public void setNDiAcid(int diAcid)

getNCrossLinkersAcid

public int getNCrossLinkersAcid()

setNCrossLinkersAcid

public void setNCrossLinkersAcid(int crossLinkersAcid)

resetBonds

public void resetBonds()

makeAgent

public IAtom[] makeAgent(IAtom a,
                         Box agentBox)

Implementation of AtomAgentManager.AgentSource interface. Agent is used to hold bonding partners.

Specified by:

makeAgent in interface AtomLeafAgentManager.AgentSource<IAtom[]>

agentBox - TODO

releaseAgent

public void releaseAgent(IAtom[] agent,
                         IAtom atom,
                         Box agentBox)

Description copied from interface: AtomLeafAgentManager.AgentSource

This informs the agent source that the agent is going away and that the agent source should disconnect the agent from other elements. The agentBox is provided for convenience for agent sources that handle multiple boxes.

Specified by:

releaseAgent in interface AtomLeafAgentManager.AgentSource<IAtom[]>

getAgentManager

public AtomLeafAgentManager<IAtom[]> getAgentManager()