Package etomica.graphics

Class ColorSchemeOverlap

java.lang.Object

etomica.graphics.ColorScheme

etomica.graphics.ColorSchemeCollectiveAgent

etomica.graphics.ColorSchemeOverlap

All Implemented Interfaces:

AtomLeafAgentManager.AgentSource<java.awt.Color>, ColorSchemeCollective

public class ColorSchemeOverlap
extends ColorSchemeCollectiveAgent

Color atoms based on how many overlaps they have with their neighbors

Nested Class Summary

Nested classes/interfaces inherited from class etomica.graphics.ColorScheme

ColorScheme.Simple

Field Summary

Fields

Modifier and Type	Field	Description
protected Boundary	boundary
protected java.awt.Color[]	colors
protected Vector	dr
protected IAtomList	leafList
protected NeighborListManager	neighborManager
protected int[]	nOverlaps
protected double	sig2

Fields inherited from class etomica.graphics.ColorScheme

DEFAULT_ATOM_COLOR, defaultColor

Fields inherited from class etomica.graphics.ColorSchemeCollectiveAgent

agentManager

Constructor Summary

Constructors

Constructor	Description
ColorSchemeOverlap(Space space, PotentialMasterList potentialMaster, Box box)

Method Summary

Modifier and Type	Method	Description
void	colorAllAtoms()	Determine color of all atoms.
void	setSigma(double newSigma)

Methods inherited from class etomica.graphics.ColorScheme

getDefaultColor, main, setDefaultColor

Methods inherited from class etomica.graphics.ColorSchemeCollectiveAgent

getAgentClass, getAtomColor, makeAgent, releaseAgent

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

neighborManager

protected final NeighborListManager neighborManager

boundary

protected final Boundary boundary

leafList

protected final IAtomList leafList

dr

protected final Vector dr

sig2

protected double sig2

nOverlaps

protected int[] nOverlaps

colors

protected java.awt.Color[] colors

Constructor Detail

ColorSchemeOverlap

public ColorSchemeOverlap(Space space,
                          PotentialMasterList potentialMaster,
                          Box box)

Method Detail

colorAllAtoms

public void colorAllAtoms()

Description copied from interface: ColorSchemeCollective

Determine color of all atoms. Color is not re-determined when getAtomColor is called.

Specified by:

colorAllAtoms in interface ColorSchemeCollective

Specified by:

colorAllAtoms in class ColorSchemeCollectiveAgent

setSigma

public void setSigma(double newSigma)