Package etomica.graph.model.impl

Class GraphImpl

java.lang.Object

etomica.graph.model.impl.GraphImpl

All Implemented Interfaces:

Graph, java.lang.Comparable<Graph>

public class GraphImpl
extends java.lang.Object
implements Graph

Field Summary

Fields

Modifier and Type	Field	Description
static boolean	useReverseEdges

Constructor Summary

Constructors

Constructor	Description
GraphImpl(byte nodeCount)
GraphImpl(byte nodeCount, byte rootNodeCount)
GraphImpl(byte nodeCount, byte rootNodeCount, Bitmap store)
GraphImpl(byte nodeCount, byte rootNodeCount, Bitmap store, Coefficient coefficient)
GraphImpl(byte nodeCount, Bitmap store)
GraphImpl(Node[] nodes)

Method Summary

Modifier and Type	Method	Description
void	addFactors(int[] newFactors)
Coefficient	coefficient()
int	compareTo(Graph other)
Graph	copy()
protected void	createEdges()
protected void	createReverseEdge(byte i)
void	createReverseEdges()
void	deleteEdge(byte edgeId)
void	deleteEdge(byte fromNode, byte toNode)
byte	edgeCount()
java.util.List<Edge>	edges()
java.lang.String	edgesToString()
boolean	equals(java.lang.Object obj)
int[]	factors()	factors are considered to be variables that go with the diagram, such as rhoA^2 rhoB^3 The array contains the exponents on each of the factors
Edge	getEdge(byte edgeId)
Edge	getEdge(byte fromNode, byte toNode)
byte	getEdgeId(byte fromNode, byte toNode)
byte	getFromNode(byte edgeId)
Node	getNode(byte node)
byte	getOutDegree(byte node)
byte	getOutNode(byte node, byte index)
java.lang.String	getSignature()
Bitmap	getStore()
byte	getToNode(byte edgeId)
boolean	hasEdge(byte edgeId)
boolean	hasEdge(byte fromNode, byte toNode)
byte	nodeCount()
java.util.List<Node>	nodes()
java.lang.String	nodesToString()
void	putEdge(byte edgeId)
void	putEdge(byte fromNode, byte toNode)
void	setNumFactors(int numFactors)
java.lang.String	toString()
java.lang.String	toSVG(int dim)
void	visitEdges(EdgeVisitor visitor)
void	visitNodes(NodeVisitor visitor)

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

useReverseEdges

public static boolean useReverseEdges

Constructor Detail

GraphImpl

public GraphImpl(Node[] nodes)

GraphImpl

public GraphImpl(byte nodeCount)

GraphImpl

public GraphImpl(byte nodeCount,
                 byte rootNodeCount)

GraphImpl

public GraphImpl(byte nodeCount,
                 Bitmap store)

GraphImpl

public GraphImpl(byte nodeCount,
                 byte rootNodeCount,
                 Bitmap store)

GraphImpl

public GraphImpl(byte nodeCount,
                 byte rootNodeCount,
                 Bitmap store,
                 Coefficient coefficient)

Method Detail

createReverseEdges

public void createReverseEdges()

Specified by:

createReverseEdges in interface Graph

createReverseEdge

protected void createReverseEdge(byte i)

setNumFactors

public void setNumFactors(int numFactors)

Specified by:

setNumFactors in interface Graph

factors

public int[] factors()

Description copied from interface: Graph

factors are considered to be variables that go with the diagram, such as rhoA^2 rhoB^3 The array contains the exponents on each of the factors

Specified by:

factors in interface Graph

addFactors

public void addFactors(int[] newFactors)

Specified by:

addFactors in interface Graph

coefficient

public Coefficient coefficient()

Specified by:

coefficient in interface Graph

compareTo

public int compareTo(Graph other)

Specified by:

compareTo in interface java.lang.Comparable<Graph>

copy

public Graph copy()

Specified by:

copy in interface Graph

createEdges

protected void createEdges()

deleteEdge

public void deleteEdge(byte fromNode,
                       byte toNode)

Specified by:

deleteEdge in interface Graph

deleteEdge

public void deleteEdge(byte edgeId)

Specified by:

deleteEdge in interface Graph

edges

public java.util.List<Edge> edges()

Specified by:

edges in interface Graph

edgesToString

public java.lang.String edgesToString()

Specified by:

edgesToString in interface Graph

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

getSignature

public java.lang.String getSignature()

Specified by:

getSignature in interface Graph

getEdge

public Edge getEdge(byte fromNode,
                    byte toNode)

Specified by:

getEdge in interface Graph

getEdge

public Edge getEdge(byte edgeId)

Specified by:

getEdge in interface Graph

edgeCount

public byte edgeCount()

Specified by:

edgeCount in interface Graph

getEdgeId

public byte getEdgeId(byte fromNode,
                      byte toNode)

Specified by:

getEdgeId in interface Graph

getFromNode

public byte getFromNode(byte edgeId)

Specified by:

getFromNode in interface Graph

getNode

public Node getNode(byte node)

Specified by:

getNode in interface Graph

nodeCount

public byte nodeCount()

Specified by:

nodeCount in interface Graph

getOutDegree

public byte getOutDegree(byte node)

Specified by:

getOutDegree in interface Graph

getOutNode

public byte getOutNode(byte node,
                       byte index)

Specified by:

getOutNode in interface Graph

getStore

public Bitmap getStore()

Specified by:

getStore in interface Graph

getToNode

public byte getToNode(byte edgeId)

Specified by:

getToNode in interface Graph

hasEdge

public boolean hasEdge(byte fromNode,
                       byte toNode)

Specified by:

hasEdge in interface Graph

hasEdge

public boolean hasEdge(byte edgeId)

Specified by:

hasEdge in interface Graph

nodes

public java.util.List<Node> nodes()

Specified by:

nodes in interface Graph

nodesToString

public java.lang.String nodesToString()

Specified by:

nodesToString in interface Graph

putEdge

public void putEdge(byte fromNode,
                    byte toNode)

Specified by:

putEdge in interface Graph

putEdge

public void putEdge(byte edgeId)

Specified by:

putEdge in interface Graph

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

toSVG

public java.lang.String toSVG(int dim)

Specified by:

toSVG in interface Graph

visitEdges

public void visitEdges(EdgeVisitor visitor)

Specified by:

visitEdges in interface Graph

visitNodes

public void visitNodes(NodeVisitor visitor)

Specified by:

visitNodes in interface Graph