Package etomica.freeenergy.npath

Class ConfigFromFileLAMMPS.ColorSchemeDeviation

java.lang.Object

etomica.graphics.ColorScheme

etomica.freeenergy.npath.ConfigFromFileLAMMPS.ColorSchemeDeviation

All Implemented Interfaces:

ColorSchemeCollective

Enclosing class:

ConfigFromFileLAMMPS

public static class ConfigFromFileLAMMPS.ColorSchemeDeviation
extends ColorScheme
implements ColorSchemeCollective

Nested Class Summary

Nested classes/interfaces inherited from class etomica.graphics.ColorScheme

ColorScheme.Simple

Field Summary

Fields

Modifier and Type	Field	Description
protected Box	box
protected java.awt.Color[]	colors
protected Vector	dr
protected Vector[]	edges
protected Vector	r0
protected Vector[]	rescaledCoords0
protected double	rNbr
protected Vector[]	scaledCoords0
protected Tensor	t

Fields inherited from class etomica.graphics.ColorScheme

DEFAULT_ATOM_COLOR, defaultColor

Constructor Summary

Constructors

Constructor	Description
ColorSchemeDeviation(Box box, Space space)

Method Summary

Modifier and Type	Method	Description
void	colorAllAtoms()	Determine color of all atoms.
java.awt.Color	getAtomColor(IAtom a)
Vector	getDisplacement(IAtom a)
double	getRelativeDisplacement(IAtom a)
void	setLattice(Vector[] latticeEdges, Vector[] latticeCoords)

Methods inherited from class etomica.graphics.ColorScheme

getDefaultColor, main, setDefaultColor

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

scaledCoords0

protected final Vector[] scaledCoords0

rescaledCoords0

protected final Vector[] rescaledCoords0

box

protected final Box box

dr

protected final Vector dr

colors

protected final java.awt.Color[] colors

edges

protected final Vector[] edges

t

protected final Tensor t

r0

protected final Vector r0

rNbr

protected double rNbr

Constructor Detail

ColorSchemeDeviation

public ColorSchemeDeviation(Box box,
                            Space space)

Method Detail

setLattice

public void setLattice(Vector[] latticeEdges,
                       Vector[] latticeCoords)

colorAllAtoms

public void colorAllAtoms()

Description copied from interface: ColorSchemeCollective

Determine color of all atoms. Color is not re-determined when getAtomColor is called.

Specified by:

colorAllAtoms in interface ColorSchemeCollective

getDisplacement

public Vector getDisplacement(IAtom a)

getRelativeDisplacement

public double getRelativeDisplacement(IAtom a)

getAtomColor

public java.awt.Color getAtomColor(IAtom a)

Specified by:

getAtomColor in class ColorScheme