MeterProfileByVolume

java.lang.Object
- etomica.data.meter.MeterProfileByVolume

All Implemented Interfaces:

DataSourceIndependent, IDataSource, java.io.Serializable

Direct Known Subclasses:

MeterProfileByVolumeAdsorption
```
public class MeterProfileByVolume
extends java.lang.Object
implements IDataSource, DataSourceIndependent, java.io.Serializable
```
Meter that takes a (scalar) Meter and records its property as a 1-dimensional function of position in the simulation volume. The measured property must be a quantity that can be associated with a single molecule. The position coordinate lies along one dimension (x,y,z). Data is averaged as sum(values)/dV where dV is the volume of the bin. As such, this meter is measuring the "density" of the quantity returned by the atomic meter.

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type	Field	Description
`protected Box`	`box`
`protected DataFunction`	`data`
`protected IDataInfo`	`dataInfo`
`protected double`	`dV`
`protected DataSourceMolecular`	`meter`	Meter that defines the property being profiled.
`protected Vector`	`position`
`protected IMoleculePositionDefinition`	`positionDefinition`
`protected int`	`profileDim`	Vector describing the orientation of the profile.
`protected ISpecies`	`species`
`protected DataTag`	`tag`
`protected DataSourceUniform`	`xDataSource`

Constructor Summary

Constructors
Constructor Description

MeterProfileByVolume(Space space)
Default constructor sets profile along the y-axis, with 100 histogram points.

Constructors
Constructor	Description
`MeterProfileByVolume(Space space)`	Default constructor sets profile along the y-axis, with 100 histogram points.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Box`	`getBox()`
`IData`	`getData()`	Returns the profile for the current configuration.
`IDataInfo`	`getDataInfo()`
`DataSourceMolecular`	`getDataSource()`	The meter that defines the profiled quantity
`int`	`getIndependentArrayDimension()`	Returns the number of independent data dimensions
`DataDoubleArray`	`getIndependentData(int i)`	Returns the X data for the given dimension
`DataDoubleArray.DataInfoDoubleArray`	`getIndependentDataInfo(int i)`	Returns the DataInfo for the given dimension
`DataTag`	`getIndependentTag()`	Returns the tag associated with this DataSource.
`IMoleculePositionDefinition`	`getPositionDefinition()`
`int`	`getProfileDim()`	Accessor method for vector describing the direction along which the profile is measured.
`ISpecies`	`getSpecies()`
`DataTag`	`getTag()`
`DataSourceUniform`	`getXDataSource()`
`void`	`reset()`
`void`	`setBox(Box box)`
`void`	`setDataSource(DataSourceMolecular m)`	Accessor method for the meter that defines the profiled quantity.
`void`	`setPositionDefinition(IMoleculePositionDefinition positionDefinition)`
`void`	`setProfileDim(int dim)`	Accessor method for vector describing the direction along which the profile is measured.
`void`	`setSpecies(ISpecies newSpecies)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - box
```
protected Box box
```
  - xDataSource
```
protected DataSourceUniform xDataSource
```
  - data
```
protected DataFunction data
```
  - dataInfo
```
protected IDataInfo dataInfo
```
  - profileDim
```
protected int profileDim
```
    Vector describing the orientation of the profile. For example, (1,0) is along the x-axis.
  - position
```
protected final Vector position
```
  - meter
```
protected DataSourceMolecular meter
```
    Meter that defines the property being profiled.
  - tag
```
protected final DataTag tag
```
  - species
```
protected ISpecies species
```
  - positionDefinition
```
protected IMoleculePositionDefinition positionDefinition
```
  - dV
```
protected double dV
```
- Constructor Detail
  - MeterProfileByVolume
```
public MeterProfileByVolume(Space space)
```
    Default constructor sets profile along the y-axis, with 100 histogram points.
- Method Detail
  - getDataInfo
```
public IDataInfo getDataInfo()
```
    Specified by:
    
    getDataInfo in interface IDataSource
  - getTag
```
public DataTag getTag()
```
    Specified by:
    
    getTag in interface IDataSource
    
    Returns:
    
    a tag that uniquely identifies the IDataInfo
  - getDataSource
```
public DataSourceMolecular getDataSource()
```
    The meter that defines the profiled quantity
  - setDataSource
```
public void setDataSource(DataSourceMolecular m)
```
    Accessor method for the meter that defines the profiled quantity.
  - getProfileDim
```
public int getProfileDim()
```
    Accessor method for vector describing the direction along which the profile is measured. Each atom position is dotted along this vector to obtain its profile abscissa value.
  - setProfileDim
```
public void setProfileDim(int dim)
```
    Accessor method for vector describing the direction along which the profile is measured. Each atom position is dotted along this vector to obtain its profile abscissa value. The given vector is converted to a unit vector, if not already.
  - getData
```
public IData getData()
```
    Returns the profile for the current configuration.
    
    Specified by:
    
    getData in interface IDataSource
    
    Returns:
    
    the data given by this source
  - getIndependentData
```
public DataDoubleArray getIndependentData(int i)
```
    Description copied from interface: DataSourceIndependent
    
    Returns the X data for the given dimension
    
    Specified by:
    
    getIndependentData in interface DataSourceIndependent
  - getIndependentDataInfo
```
public DataDoubleArray.DataInfoDoubleArray getIndependentDataInfo(int i)
```
    Description copied from interface: DataSourceIndependent
    
    Returns the DataInfo for the given dimension
    
    Specified by:
    
    getIndependentDataInfo in interface DataSourceIndependent
  - getIndependentArrayDimension
```
public int getIndependentArrayDimension()
```
    Description copied from interface: DataSourceIndependent
    
    Returns the number of independent data dimensions
    
    Specified by:
    
    getIndependentArrayDimension in interface DataSourceIndependent
  - getIndependentTag
```
public DataTag getIndependentTag()
```
    Description copied from interface: DataSourceIndependent
    
    Returns the tag associated with this DataSource.
    
    Specified by:
    
    getIndependentTag in interface DataSourceIndependent
  - getBox
```
public Box getBox()
```
    Returns:
    
    Returns the box.
  - setBox
```
public void setBox(Box box)
```
    Parameters:
    
    box - The box to set.
  - getSpecies
```
public ISpecies getSpecies()
```
  - setSpecies
```
public void setSpecies(ISpecies newSpecies)
```
  - reset
```
public void reset()
```
  - getXDataSource
```
public DataSourceUniform getXDataSource()
```
  - setPositionDefinition
```
public void setPositionDefinition(IMoleculePositionDefinition positionDefinition)
```
  - getPositionDefinition
```
public IMoleculePositionDefinition getPositionDefinition()
```

Class MeterProfileByVolume

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

box

xDataSource

data

dataInfo

profileDim

position

meter

tag

species

positionDefinition

dV

Constructor Detail

MeterProfileByVolume

Method Detail

getDataInfo

getTag

getDataSource

setDataSource

getProfileDim

setProfileDim

getData

getIndependentData

getIndependentDataInfo

getIndependentArrayDimension

getIndependentTag

getBox

setBox

getSpecies

setSpecies

reset

getXDataSource

setPositionDefinition

getPositionDefinition