Package etomica.atom.iterator

Class ApiIntragroup

java.lang.Object

etomica.atom.iterator.ApiIntragroup

All Implemented Interfaces:

AtomLeafsetIterator, AtomsetIterator, AtomsetIteratorBasisDependent, AtomsetIteratorDirectable, AtomsetIteratorTargetable, java.io.Serializable

public final class ApiIntragroup
extends java.lang.Object
implements AtomsetIteratorBasisDependent, AtomsetIteratorDirectable, java.io.Serializable

Returns iterates from the childList of a single basis atom. Behavior is set via iterator directive: if no atom is specified there, all pairs formed from the childList are given; otherwise, if an atom is specified there, pairs will be formed from the childList atoms with the basis' child from which the target atom is descended.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
ApiIntragroup()	Constructor makes iterator that must have basis specified and then be reset() before iteration.
ApiIntragroup(AtomIteratorAtomDependent aiInnerUp, AtomIteratorAtomDependent aiInnerDn)
ApiIntragroup(AtomsetIteratorBasisDependent aiOuter, AtomIteratorAtomDependent aiInnerUp, AtomIteratorAtomDependent aiInnerDn)

Method Summary

Modifier and Type	Method	Description
int	basisSize()	Returns 1, indicating the the array given to the setBasis method should have only one element.
boolean	haveTarget(IAtom target)	Returns true if the iterator with its current basis would return an iterate for the given target.
int	nBody()	Returns the number of atoms given in each iterate, i.e., the size of the atom array returned with each call to next().
IAtomList	next()	Returns the next AtomSet iterate, or null if hasNext() is false.
void	reset()	Puts iterator in a state to begin iteration.
void	setBasis(IMoleculeList atoms)	Specifies the parent atom of the iterates.
void	setDirection(IteratorDirective.Direction direction)	Specifies the direction, which applies only if iterating pairs with a target atom; otherwise, if all pairs from group are indicated, direction is ignored.
void	setTarget(IAtom newTargetAtom)
int	size()	Returns the number of atom pairs the iterator will return if reset and iterated in its present state.
void	unset()	Puts iterator in a state in which hasNext() returns false.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ApiIntragroup

public ApiIntragroup()

Constructor makes iterator that must have basis specified and then be reset() before iteration.

ApiIntragroup

public ApiIntragroup(AtomIteratorAtomDependent aiInnerUp,
                     AtomIteratorAtomDependent aiInnerDn)

ApiIntragroup

public ApiIntragroup(AtomsetIteratorBasisDependent aiOuter,
                     AtomIteratorAtomDependent aiInnerUp,
                     AtomIteratorAtomDependent aiInnerDn)

Method Detail

nBody

public int nBody()

Description copied from interface: AtomsetIterator

Returns the number of atoms given in each iterate, i.e., the size of the atom array returned with each call to next().

Specified by:

nBody in interface AtomsetIterator

Returns:

setTarget

public void setTarget(IAtom newTargetAtom)

Specified by:

setTarget in interface AtomsetIteratorTargetable

haveTarget

public boolean haveTarget(IAtom target)

Description copied from interface: AtomsetIteratorBasisDependent

Returns true if the iterator with its current basis would return an iterate for the given target.

Specified by:

haveTarget in interface AtomsetIteratorBasisDependent

reset

public void reset()

Puts iterator in a state to begin iteration.

Specified by:

reset in interface AtomsetIterator

unset

public void unset()

Description copied from interface: AtomsetIterator

Puts iterator in a state in which hasNext() returns false.

Specified by:

unset in interface AtomsetIterator

setBasis

public void setBasis(IMoleculeList atoms)

Specifies the parent atom of the iterates. Pairs given by the iterator will be formed from the childList of the first atom in the given array. If argument is null or otherwise does not specify a childList, iterator will not return iterates (hasNext false) until a valid basis is specified. Length of given array should match the value returned by setBasis, but if it is greater no error results; only first atom in array is used.

Specified by:

setBasis in interface AtomsetIteratorBasisDependent

Parameters:

atoms - The basis atoms; a null basis will condition the iterator to give no iterates until a valid basis is specified via another call to this method.

setDirection

public void setDirection(IteratorDirective.Direction direction)

Specifies the direction, which applies only if iterating pairs with a target atom; otherwise, if all pairs from group are indicated, direction is ignored.

Specified by:

setDirection in interface AtomsetIteratorDirectable

size

public int size()

Returns the number of atom pairs the iterator will return if reset and iterated in its present state.

Specified by:

size in interface AtomsetIterator

next

public IAtomList next()

Description copied from interface: AtomLeafsetIterator

Returns the next AtomSet iterate, or null if hasNext() is false.

Specified by:

next in interface AtomLeafsetIterator

basisSize

public int basisSize()

Returns 1, indicating the the array given to the setBasis method should have only one element.

Specified by:

basisSize in interface AtomsetIteratorBasisDependent

Returns:

the size of the basis for this iterator.